Wall clock time and date at job start Mon Mar 30 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 C 1.53001 * 109.47117 * 59.99509 * 3 2 1 5 5 C 1.52998 * 109.46748 * 299.99506 * 3 2 1 6 6 C 1.52994 * 109.46894 * 179.97438 * 3 2 1 7 7 H 1.09001 * 110.27834 * 302.08549 * 6 3 2 8 8 C 1.54948 * 110.31140 * 179.97438 * 6 3 2 9 9 C 1.55297 * 100.94667 * 204.63922 * 8 6 3 10 10 C 1.54387 * 102.25378 * 34.13129 * 9 8 6 11 11 H 1.08991 * 109.83042 * 98.15431 * 10 9 8 12 12 C 1.50694 * 109.83084 * 219.13209 * 10 9 8 13 13 H 1.07998 * 120.00531 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00139 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99798 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00461 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47176 * 89.99639 * 16 14 12 18 18 H 1.48501 * 109.47118 * 210.00362 * 16 14 12 19 19 H 1.48501 * 109.46851 * 330.00041 * 16 14 12 20 20 O 1.43243 * 107.58660 * 338.64249 * 10 9 8 21 21 H 1.09003 * 109.47306 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47703 * 300.00510 * 1 2 3 23 23 H 1.09008 * 109.46899 * 60.00544 * 1 2 3 24 24 H 1.08997 * 109.47703 * 239.99490 * 2 1 3 25 25 H 1.08999 * 109.46756 * 119.99312 * 2 1 3 26 26 H 1.08999 * 109.46672 * 180.02562 * 4 3 2 27 27 H 1.09005 * 109.46990 * 299.99729 * 4 3 2 28 28 H 1.08996 * 109.47201 * 60.00627 * 4 3 2 29 29 H 1.08996 * 109.47528 * 299.99992 * 5 3 2 30 30 H 1.09005 * 109.47593 * 60.00128 * 5 3 2 31 31 H 1.08999 * 109.47228 * 180.02562 * 5 3 2 32 32 H 1.09001 * 111.12743 * 86.71546 * 8 6 3 33 33 H 1.09002 * 111.11997 * 322.55940 * 8 6 3 34 34 H 1.09003 * 110.84981 * 275.94467 * 9 8 6 35 35 H 1.09001 * 111.02587 * 152.39873 * 9 8 6 36 36 H 0.96998 * 120.00403 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1636 -1.2493 6 6 3.5699 1.4425 0.0006 7 1 3.9473 0.8995 0.8672 8 6 4.1078 2.8956 0.0000 9 6 5.5102 2.6907 -0.6349 10 6 5.2520 1.5448 -1.6368 11 1 5.1035 1.9538 -2.6361 12 6 6.4220 0.5951 -1.6398 13 1 7.2696 0.7803 -0.9967 14 6 6.4104 -0.5105 -2.4636 15 7 5.3780 -0.7364 -3.2464 16 14 7.8604 -1.6882 -2.4669 17 1 7.6379 -2.7500 -1.4530 18 1 7.9928 -2.3065 -3.8105 19 1 9.1031 -0.9441 -2.1398 20 8 4.0691 0.8573 -1.2125 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 1.8928 3.1916 1.2489 27 1 0.4398 2.1638 1.2491 28 1 1.8932 1.6501 2.1392 29 1 1.8934 1.6498 -2.1392 30 1 0.4400 2.1636 -1.2494 31 1 1.8937 3.1912 -1.2496 32 1 4.1891 3.2849 1.0149 33 1 3.4873 3.5439 -0.6188 34 1 6.2374 2.3900 0.1193 35 1 5.8405 3.5913 -1.1525 36 1 5.3700 -1.5139 -3.8263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307482891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:54 Heat of formation + Delta-G solvation = -88.321037 kcal Electronic energy + Delta-G solvation = -15239.101083 eV Core-core repulsion = 12914.665519 eV Total energy + Delta-G solvation = -2324.435564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56476 -37.54208 -34.54812 -32.68554 -31.41277 -29.28945 -28.08288 -26.61030 -25.03225 -22.40420 -21.82987 -19.31611 -18.51860 -17.24810 -16.78810 -16.25858 -15.59095 -15.45985 -14.88313 -14.37798 -14.01209 -13.72322 -13.45322 -13.28783 -12.95116 -12.83726 -12.66827 -12.58891 -12.39681 -12.19335 -11.95233 -11.92174 -11.61026 -11.36049 -11.17025 -10.98075 -10.89823 -10.63935 -9.68187 -8.11356 -6.33037 1.37401 1.38815 1.49241 2.40117 3.08511 3.56826 3.81664 3.93665 4.13833 4.18966 4.33617 4.43691 4.51295 4.66503 4.74285 4.78251 4.81914 4.87479 4.94823 5.01558 5.11180 5.15439 5.17801 5.23185 5.25488 5.31456 5.37749 5.47143 5.57858 5.69570 5.73408 5.82790 6.22015 6.64589 7.13653 7.44294 8.95053 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037030 B = 0.009670 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.957500 B = 2894.976195 C = 3308.363108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.058 4.058 4 C -0.133 4.133 5 C -0.131 4.131 6 C 0.075 3.925 7 H 0.034 0.966 8 C -0.139 4.139 9 C -0.141 4.141 10 C 0.200 3.800 11 H -0.003 1.003 12 C -0.566 4.566 13 H 0.058 0.942 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.262 1.262 20 O -0.382 6.382 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.029 0.971 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 5.849 8.148 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.058 4.058 4 C -0.190 4.190 5 C -0.188 4.188 6 C 0.017 3.983 7 H 0.052 0.948 8 C -0.176 4.176 9 C -0.179 4.179 10 C 0.144 3.856 11 H 0.015 0.985 12 C -0.604 4.604 13 H 0.076 0.924 14 C -0.179 4.179 15 N -0.539 5.539 16 Si 0.781 3.219 17 H -0.203 1.203 18 H -0.205 1.205 19 H -0.187 1.187 20 O -0.302 6.302 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.239 5.573 7.901 12.703 hybrid contribution 1.157 -0.861 -0.404 1.498 sum -7.082 4.712 7.498 11.339 Atomic orbital electron populations 1.21833 0.93966 1.01728 1.02561 1.21432 0.97071 0.95989 1.00260 1.20626 0.92446 0.95682 0.97026 1.21853 1.01845 1.00100 0.95235 1.21807 1.00815 0.99580 0.96629 1.22981 0.94098 0.92621 0.88620 0.94822 1.23292 0.95493 0.96917 1.01894 1.23092 0.97658 0.98408 0.98722 1.20110 0.83807 0.89645 0.92051 0.98480 1.21854 1.03489 1.10863 1.24149 0.92427 1.25923 0.98269 0.99379 0.94303 1.70188 1.30980 1.28006 1.24699 0.85608 0.79823 0.78995 0.77466 1.20271 1.20529 1.18654 1.88659 1.43565 1.58267 1.39731 0.92883 0.90658 0.92490 0.95232 0.93060 0.91640 0.90471 0.92583 0.95486 0.90926 0.92302 0.88818 0.89964 0.92093 0.90918 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.21 71.98 0.66 -2.99 16 2 C -0.11 -3.73 4.89 30.60 0.15 -3.58 16 3 C -0.06 -1.87 0.42 -52.18 -0.02 -1.90 16 4 C -0.13 -3.16 7.89 71.98 0.57 -2.59 16 5 C -0.13 -4.25 7.69 71.98 0.55 -3.70 16 6 C 0.07 3.04 2.67 31.26 0.08 3.13 16 7 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 8 C -0.14 -4.80 5.31 32.05 0.17 -4.63 16 9 C -0.14 -5.91 6.53 31.85 0.21 -5.71 16 10 C 0.20 10.84 3.35 30.32 0.10 10.94 16 11 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 12 C -0.57 -33.30 8.75 25.60 0.22 -33.07 16 13 H 0.06 3.27 7.52 -2.91 -0.02 3.25 16 14 C 0.02 1.36 5.41 84.65 0.46 1.82 16 15 N -0.90 -56.48 12.93 21.45 0.28 -56.20 16 16 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 20 O -0.38 -20.51 8.98 -148.98 -1.34 -21.85 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.07 1.55 6.43 -2.39 -0.02 1.53 16 23 H 0.06 1.42 6.43 -2.38 -0.02 1.40 16 24 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.41 7.19 -2.39 -0.02 1.39 16 27 H 0.08 1.51 6.43 -2.38 -0.02 1.50 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.03 1.08 7.62 -2.39 -0.02 1.06 16 30 H 0.07 1.92 6.43 -2.38 -0.02 1.91 16 31 H 0.06 1.75 6.14 -2.39 -0.01 1.74 16 32 H 0.09 2.63 8.05 -2.39 -0.02 2.61 16 33 H 0.08 2.64 5.89 -2.39 -0.01 2.63 16 34 H 0.06 2.55 7.65 -2.39 -0.02 2.53 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -68.01 275.66 5.15 -62.85 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.03 Total: 9.84 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.16 Total: -42.28 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.28 Total: -56.20 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.34 Total: -21.85 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.01 5.15 -62.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307482891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.469 kcal (2) G-P(sol) polarization free energy of solvation -68.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds