Wall clock time and date at job start Mon Mar 30 2020 03:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47270 * 2 1 4 4 C 1.52995 * 109.47112 * 59.99801 * 3 2 1 5 5 C 1.53003 * 109.46965 * 299.99779 * 3 2 1 6 6 C 1.52999 * 109.47270 * 180.02562 * 3 2 1 7 7 H 1.09000 * 110.67178 * 61.50587 * 6 3 2 8 8 C 1.54992 * 110.61766 * 184.47681 * 6 3 2 9 9 C 1.54814 * 102.09130 * 155.52364 * 8 6 3 10 10 C 1.54101 * 104.18922 * 339.11822 * 9 8 6 11 11 H 1.08993 * 110.00396 * 117.46132 * 10 9 8 12 12 C 1.50701 * 109.87787 * 238.54986 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.27687 * 12 10 9 14 14 C 1.37871 * 119.99694 * 179.56250 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.43747 * 107.28906 * 357.96993 * 10 9 8 21 21 H 1.09006 * 109.47232 * 300.00565 * 1 2 3 22 22 H 1.09006 * 109.46848 * 60.00164 * 1 2 3 23 23 H 1.08997 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47049 * 239.99767 * 2 1 3 25 25 H 1.08997 * 109.46969 * 119.99868 * 2 1 3 26 26 H 1.09001 * 109.46970 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47598 * 299.99976 * 4 3 2 28 28 H 1.09006 * 109.47235 * 60.00023 * 4 3 2 29 29 H 1.08994 * 109.47227 * 300.00155 * 5 3 2 30 30 H 1.09004 * 109.46922 * 59.99961 * 5 3 2 31 31 H 1.08997 * 109.46698 * 179.97438 * 5 3 2 32 32 H 1.09003 * 110.90593 * 273.72081 * 8 6 3 33 33 H 1.08994 * 110.90849 * 37.28981 * 8 6 3 34 34 H 1.08999 * 110.48788 * 220.44117 * 9 8 6 35 35 H 1.09002 * 110.48951 * 97.79235 * 9 8 6 36 36 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5700 1.4425 -0.0006 7 1 3.9544 0.9561 -0.8972 8 6 4.1158 2.8887 0.1126 9 6 5.5198 2.6586 0.7230 10 6 5.4245 1.2655 1.3750 11 1 6.1258 0.5815 0.8972 12 6 5.7300 1.3668 2.8472 13 1 5.9809 2.3230 3.2821 14 6 5.6948 0.2378 3.6377 15 7 5.3893 -0.9266 3.1082 16 14 6.0811 0.3620 5.4612 17 1 6.3923 1.7724 5.8063 18 1 4.9067 -0.0930 6.2481 19 1 7.2517 -0.4947 5.7788 20 8 4.0789 0.7966 1.1861 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8930 3.1916 1.2489 27 1 0.4400 2.1638 1.2492 28 1 1.8933 1.6499 2.1392 29 1 1.8934 1.6499 -2.1392 30 1 0.4400 2.1637 -1.2493 31 1 1.8931 3.1915 -1.2490 32 1 4.1905 3.3543 -0.8702 33 1 3.4949 3.4878 0.7786 34 1 5.7381 3.4174 1.4745 35 1 6.2807 2.6633 -0.0575 36 1 5.3650 -1.7209 3.6643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307482892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:57 Heat of formation + Delta-G solvation = -87.556733 kcal Electronic energy + Delta-G solvation = -15259.014981 eV Core-core repulsion = 12934.612560 eV Total energy + Delta-G solvation = -2324.402422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53437 -37.56639 -34.57338 -32.67858 -31.42502 -29.29314 -28.09672 -26.51328 -25.08981 -22.64797 -21.56421 -19.33325 -18.76816 -16.87139 -16.65961 -16.25672 -15.85870 -15.33839 -15.05573 -14.39477 -14.24148 -13.64865 -13.44098 -13.20970 -12.97214 -12.87633 -12.68474 -12.54560 -12.36874 -12.13343 -11.93934 -11.92849 -11.54116 -11.35489 -11.10674 -10.93348 -10.91996 -10.65842 -9.84779 -8.13771 -6.33910 1.37798 1.38859 1.51329 2.39923 3.07082 3.59678 3.79854 3.97570 4.17827 4.20429 4.29953 4.43119 4.48065 4.66273 4.70233 4.78944 4.83067 4.89423 4.93662 5.04119 5.11398 5.15718 5.18122 5.23612 5.27071 5.32593 5.38369 5.45512 5.54004 5.69463 5.74340 5.76007 6.20984 6.59759 7.05312 7.41545 8.94354 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.035094 B = 0.010003 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.675407 B = 2798.503120 C = 3197.792787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.051 4.051 4 C -0.132 4.132 5 C -0.133 4.133 6 C 0.064 3.936 7 H 0.039 0.961 8 C -0.136 4.136 9 C -0.142 4.142 10 C 0.195 3.805 11 H -0.019 1.019 12 C -0.550 4.550 13 H 0.062 0.938 14 C 0.021 3.979 15 N -0.903 5.903 16 Si 0.959 3.041 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.276 1.276 20 O -0.374 6.374 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 6.404 -7.366 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.006 3.994 7 H 0.057 0.943 8 C -0.174 4.174 9 C -0.180 4.180 10 C 0.139 3.861 11 H -0.001 1.001 12 C -0.588 4.588 13 H 0.081 0.919 14 C -0.181 4.181 15 N -0.541 5.541 16 Si 0.784 3.216 17 H -0.185 1.185 18 H -0.207 1.207 19 H -0.201 1.201 20 O -0.294 6.294 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.488 6.076 -7.204 12.683 hybrid contribution 0.811 -0.459 0.968 1.344 sum -7.677 5.617 -6.235 11.374 Atomic orbital electron populations 1.21836 0.93983 1.01754 1.02555 1.21425 0.97073 0.95885 1.00342 1.20496 0.91822 0.95757 0.97041 1.21829 1.00691 0.99721 0.96651 1.21848 1.01909 1.00083 0.95168 1.23228 0.94788 0.92130 0.89294 0.94314 1.23155 0.95524 0.97261 1.01438 1.22941 0.97748 0.97998 0.99297 1.20139 0.81484 0.89695 0.94750 1.00119 1.21623 1.48177 0.94362 0.94608 0.91944 1.25956 0.93777 0.94995 1.03328 1.70199 1.47347 0.99349 1.37163 0.85512 0.77785 0.78687 0.79661 1.18530 1.20694 1.20134 1.89179 1.29655 1.67692 1.42880 0.92596 0.90583 0.92835 0.92866 0.95258 0.92209 0.90989 0.95571 0.92400 0.90409 0.91722 0.89035 0.90419 0.91788 0.91762 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.21 71.98 0.66 -3.02 16 2 C -0.11 -3.72 4.87 30.59 0.15 -3.57 16 3 C -0.05 -1.67 0.43 -52.18 -0.02 -1.69 16 4 C -0.13 -4.39 7.63 71.98 0.55 -3.84 16 5 C -0.13 -3.15 7.95 71.98 0.57 -2.57 16 6 C 0.06 2.57 2.55 31.28 0.08 2.65 16 7 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 8 C -0.14 -4.85 5.54 31.89 0.18 -4.67 16 9 C -0.14 -6.03 6.63 31.59 0.21 -5.82 16 10 C 0.20 10.69 3.25 30.22 0.10 10.79 16 11 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 12 C -0.55 -32.29 8.78 25.60 0.22 -32.06 16 13 H 0.06 3.53 7.33 -2.91 -0.02 3.51 16 14 C 0.02 1.24 5.41 84.65 0.46 1.70 16 15 N -0.90 -56.58 12.92 21.45 0.28 -56.30 16 16 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 O -0.37 -20.17 9.20 -148.98 -1.37 -21.54 16 21 H 0.06 1.41 6.43 -2.38 -0.02 1.40 16 22 H 0.08 1.56 6.43 -2.38 -0.02 1.54 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.03 1.25 7.78 -2.39 -0.02 1.23 16 26 H 0.06 1.85 6.03 -2.39 -0.01 1.84 16 27 H 0.07 1.96 6.43 -2.39 -0.02 1.94 16 28 H 0.03 1.08 7.70 -2.38 -0.02 1.06 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.52 6.43 -2.38 -0.02 1.51 16 31 H 0.06 1.40 7.36 -2.39 -0.02 1.38 16 32 H 0.09 2.59 8.05 -2.39 -0.02 2.57 16 33 H 0.08 2.68 5.69 -2.39 -0.01 2.67 16 34 H 0.06 2.69 7.40 -2.39 -0.02 2.68 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -68.03 275.45 5.12 -62.91 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.03 Total: 9.55 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 3.16 Total: -42.10 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.28 Total: -56.30 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.37 Total: -21.54 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -68.03 5.12 -62.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307482892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.644 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds