Wall clock time and date at job start Mon Mar 30 2020 03:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47318 * 2 1 4 4 C 1.53008 * 109.46944 * 60.00137 * 3 2 1 5 5 C 1.52996 * 109.47252 * 300.00462 * 3 2 1 6 6 C 1.52996 * 109.47381 * 180.02562 * 3 2 1 7 7 H 1.09009 * 110.55168 * 302.88592 * 6 3 2 8 8 C 1.54992 * 110.62031 * 180.02562 * 6 3 2 9 9 C 1.54812 * 102.09240 * 204.47733 * 8 6 3 10 10 C 1.54106 * 104.18681 * 20.87754 * 9 8 6 11 11 H 1.09005 * 109.87286 * 242.45788 * 10 9 8 12 12 C 1.50697 * 109.87603 * 121.45748 * 10 9 8 13 13 H 1.07991 * 120.00449 * 359.72197 * 12 10 9 14 14 C 1.37885 * 119.99686 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 10 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00108 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99667 * 16 14 12 20 20 O 1.43745 * 107.29113 * 2.02880 * 10 9 8 21 21 H 1.09004 * 109.46954 * 59.99376 * 1 2 3 22 22 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46808 * 299.99859 * 1 2 3 24 24 H 1.09002 * 109.46869 * 240.00643 * 2 1 3 25 25 H 1.08996 * 109.47245 * 120.00546 * 2 1 3 26 26 H 1.08995 * 109.46842 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.46761 * 300.00170 * 4 3 2 28 28 H 1.09004 * 109.46898 * 59.99639 * 4 3 2 29 29 H 1.09002 * 109.47331 * 299.99600 * 5 3 2 30 30 H 1.09002 * 109.47285 * 59.99823 * 5 3 2 31 31 H 1.09001 * 109.47158 * 179.97438 * 5 3 2 32 32 H 1.09000 * 110.91070 * 86.27836 * 8 6 3 33 33 H 1.09003 * 110.93511 * 322.68745 * 8 6 3 34 34 H 1.09002 * 110.48740 * 262.20004 * 9 8 6 35 35 H 1.08996 * 110.60466 * 139.60957 * 9 8 6 36 36 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5301 2.1638 -1.2491 6 6 3.5701 1.4425 -0.0006 7 1 3.9531 0.8881 0.8563 8 6 4.1159 2.8931 0.0000 9 6 5.5193 2.7118 -0.6279 10 6 5.4234 1.3744 -1.3874 11 1 6.1269 0.6570 -0.9649 12 6 5.7277 1.5913 -2.8473 13 1 5.9625 2.5815 -3.2087 14 6 5.7001 0.5264 -3.7229 15 7 5.4137 -0.6794 -3.2829 16 14 6.0698 0.7966 -5.5339 17 1 6.3594 2.2335 -5.7710 18 1 7.2484 -0.0176 -5.9253 19 1 4.8948 0.3884 -6.3451 20 8 4.0779 0.8920 -1.2349 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.8938 3.1912 1.2496 27 1 0.4401 2.1637 1.2493 28 1 1.8934 1.6498 2.1393 29 1 1.8934 1.6500 -2.1392 30 1 0.4400 2.1638 -1.2491 31 1 1.8931 3.1916 -1.2489 32 1 4.1915 3.2799 1.0163 33 1 3.4950 3.5432 -0.6165 34 1 6.2808 2.6551 0.1499 35 1 5.7393 3.5270 -1.3172 36 1 5.3947 -1.4285 -3.8988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307482893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:01 Heat of formation + Delta-G solvation = -70.411132 kcal Electronic energy + Delta-G solvation = -15253.326027 eV Core-core repulsion = 12929.667095 eV Total energy + Delta-G solvation = -2323.658933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.90775 -35.99879 -32.44029 -30.96425 -29.93196 -27.53357 -26.81101 -24.82881 -23.50386 -20.95651 -19.80144 -17.86955 -16.71841 -15.13006 -15.02120 -14.44218 -14.24641 -13.75782 -13.54234 -12.81174 -12.50612 -12.20391 -11.95881 -11.69095 -11.57086 -11.43119 -10.98756 -10.88123 -10.68548 -10.53606 -10.37203 -10.19704 -10.05584 -9.88700 -9.45095 -9.44130 -9.04373 -8.51246 -7.85627 -5.95038 -4.06982 3.32258 3.40122 3.43737 4.46471 4.96238 5.16600 5.34202 5.40541 5.59841 5.72194 5.77711 5.78936 5.86710 5.92335 6.01141 6.13446 6.22450 6.24443 6.30212 6.36851 6.45203 6.52975 6.63736 6.66078 6.76036 6.82450 6.89674 6.91164 7.04251 7.17535 7.63269 7.94060 8.33597 8.66096 9.08558 9.63104 11.12392 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.035304 B = 0.009946 C = 0.008731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.923973 B = 2814.578978 C = 3206.312721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.053 4.053 4 C -0.140 4.140 5 C -0.136 4.136 6 C 0.077 3.923 7 H 0.043 0.957 8 C -0.149 4.149 9 C -0.147 4.147 10 C 0.204 3.796 11 H 0.022 0.978 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.077 3.923 15 N -0.863 5.863 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 O -0.343 6.343 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 4.073 7.019 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.053 4.053 4 C -0.198 4.198 5 C -0.193 4.193 6 C 0.018 3.982 7 H 0.061 0.939 8 C -0.186 4.186 9 C -0.185 4.185 10 C 0.148 3.852 11 H 0.040 0.960 12 C -0.567 4.567 13 H 0.079 0.921 14 C -0.128 4.128 15 N -0.500 5.500 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 O -0.262 6.262 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.190 3.744 6.821 10.594 hybrid contribution 0.370 0.202 -0.797 0.901 sum -6.820 3.946 6.024 9.918 Atomic orbital electron populations 1.21893 0.96893 1.00759 1.01392 1.21487 0.94598 0.96134 1.02565 1.20456 0.94280 0.95334 0.95212 1.21904 1.00518 1.00090 0.97247 1.21847 0.98883 1.00044 0.98525 1.22867 0.92368 0.92197 0.90816 0.93887 1.23171 0.97709 0.98335 0.99403 1.23049 0.95191 1.01473 0.98805 1.20242 0.81649 0.88144 0.95136 0.95985 1.21226 1.48442 0.94355 0.92685 0.92121 1.25071 0.93950 0.95197 0.98614 1.70052 1.46211 0.99131 1.34602 0.86620 0.77883 0.78322 0.85623 1.19712 1.20979 1.20911 1.89241 1.30281 1.70981 1.35676 0.92616 0.93521 0.93154 0.90584 0.92878 0.92846 0.92658 0.93195 0.91017 0.93804 0.93151 0.92742 0.91102 0.93487 0.91735 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.21 37.16 0.34 -1.75 16 2 C -0.11 -1.86 4.90 -26.73 -0.13 -1.99 16 3 C -0.05 -0.90 0.43 -154.51 -0.07 -0.96 16 4 C -0.14 -1.94 7.90 37.16 0.29 -1.64 16 5 C -0.14 -2.37 7.67 37.16 0.29 -2.08 16 6 C 0.08 1.55 2.56 -25.68 -0.07 1.49 16 7 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 8 C -0.15 -2.79 5.35 -24.72 -0.13 -2.92 16 9 C -0.15 -3.16 6.63 -25.20 -0.17 -3.33 16 10 C 0.20 5.38 3.24 -27.31 -0.09 5.29 16 11 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.53 -15.11 8.78 -34.44 -0.30 -15.41 16 13 H 0.06 1.69 7.33 -52.49 -0.38 1.31 16 14 C 0.08 2.22 5.41 -17.82 -0.10 2.12 16 15 N -0.86 -25.98 12.95 55.43 0.72 -25.26 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 O -0.34 -8.86 9.24 -35.23 -0.33 -9.19 16 21 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 24 H 0.08 1.52 7.90 -51.93 -0.41 1.11 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.71 7.20 -51.93 -0.37 0.34 16 27 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.49 7.59 -51.93 -0.39 1.09 16 30 H 0.04 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.05 0.85 6.16 -51.93 -0.32 0.53 16 32 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 33 H 0.07 1.31 5.91 -51.93 -0.31 1.00 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.38 7.40 -51.93 -0.38 1.00 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 275.56 15.07 4.15 4.15 Total: -1.00 -30.02 275.56 -6.60 -36.63 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.00 Total: -1.82 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -0.13 Total: -21.19 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.72 Total: -25.26 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.33 Total: -9.19 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.02 -6.60 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307482893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.786 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds