Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21275 * 120.00046 * 2 1 4 4 N 1.34781 * 119.99649 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99635 * 179.97438 * 4 2 1 6 6 C 1.53509 * 114.17451 * 205.00133 * 5 4 2 7 7 N 1.47475 * 87.93935 * 220.33387 * 6 5 4 8 8 C 1.46893 * 111.00082 * 138.70124 * 7 6 5 9 9 H 1.08997 * 109.47475 * 308.50130 * 8 7 6 10 10 C 1.53000 * 109.46961 * 188.50243 * 8 7 6 11 11 C 1.50696 * 109.47069 * 68.50573 * 8 7 6 12 12 H 1.08001 * 120.00255 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00075 * 179.72287 * 11 8 7 14 14 N 1.31514 * 120.00127 * 0.27327 * 13 11 8 15 15 Si 1.86798 * 120.00252 * 180.27335 * 13 11 8 16 16 H 1.48498 * 109.47182 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47366 * 120.00074 * 15 13 11 18 18 H 1.48497 * 109.47317 * 239.99864 * 15 13 11 19 19 C 1.47486 * 87.83351 * 27.00843 * 7 6 5 20 20 H 1.09005 * 109.47390 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47157 * 299.99973 * 1 2 3 22 22 H 1.09001 * 109.47256 * 59.99509 * 1 2 3 23 23 H 0.96995 * 120.00361 * 0.02562 * 4 2 1 24 24 H 1.09005 * 113.38762 * 338.08762 * 5 4 2 25 25 H 1.09005 * 113.47709 * 105.56157 * 6 5 4 26 26 H 1.09004 * 113.52797 * 335.11314 * 6 5 4 27 27 H 1.08994 * 109.47352 * 293.99273 * 10 8 7 28 28 H 1.09003 * 109.47179 * 53.99808 * 10 8 7 29 29 H 1.09007 * 109.47330 * 173.99174 * 10 8 7 30 30 H 0.97003 * 120.00683 * 179.97438 * 14 13 11 31 31 H 1.08999 * 113.47358 * 87.75536 * 19 7 6 32 32 H 1.09000 * 113.47509 * 218.22356 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.2742 -2.4369 -0.5913 7 7 5.2778 -2.3785 0.4877 8 6 5.5491 -3.7175 1.0273 9 1 4.6082 -4.2008 1.2903 10 6 6.4265 -3.5964 2.2749 11 6 6.2643 -4.5423 -0.0116 12 1 6.4939 -4.1147 -0.9764 13 6 6.6301 -5.8412 0.2715 14 7 6.3502 -6.3621 1.4462 15 14 7.5234 -6.8611 -1.0135 16 1 7.7183 -6.0496 -2.2417 17 1 8.8456 -7.2793 -0.4821 18 1 6.7171 -8.0652 -1.3379 19 6 4.2748 -1.6720 1.3062 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.6958 -2.0073 0.0005 24 1 4.0783 -0.2393 -0.3742 25 1 4.6963 -2.2900 -1.5855 26 1 3.6253 -3.3109 -0.5340 27 1 7.4068 -3.2118 1.9938 28 1 5.9578 -2.9138 2.9838 29 1 6.5397 -4.5776 2.7361 30 1 6.6072 -7.2761 1.6452 31 1 3.6254 -2.3414 1.8705 32 1 4.6976 -0.8769 1.9203 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307528677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = -5.623527 kcal Electronic energy + Delta-G solvation = -14195.002304 eV Core-core repulsion = 11770.612430 eV Total energy + Delta-G solvation = -2424.389875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07493 -38.54616 -34.31471 -33.04428 -30.58615 -29.37515 -26.01872 -25.25421 -24.47785 -20.92167 -20.22473 -19.30825 -16.79718 -16.55470 -15.93714 -15.28857 -14.88048 -14.46524 -13.77796 -13.47434 -12.91327 -12.65026 -12.40011 -12.31426 -12.00524 -11.71741 -11.13715 -10.93588 -10.81369 -10.47925 -10.28359 -10.17496 -9.86330 -9.60939 -8.92415 -8.77923 -8.53446 -7.84268 -6.07268 -4.12113 2.69442 3.26094 3.34000 3.34774 3.39568 4.37206 4.79319 4.94553 4.97354 5.11833 5.25227 5.32113 5.44560 5.67470 5.85096 6.02309 6.23212 6.27566 6.39736 6.60561 6.70422 6.81932 6.99664 7.30602 7.38406 7.62764 7.76336 7.99147 8.20336 8.31212 8.41653 8.93960 9.53361 10.99962 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.053977 B = 0.006663 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.611359 B = 4201.397384 C = 4386.326432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.553 6.553 4 N -0.716 5.716 5 C 0.105 3.895 6 C 0.012 3.988 7 N -0.461 5.461 8 C 0.181 3.819 9 H 0.006 0.994 10 C -0.127 4.127 11 C -0.505 4.505 12 H 0.062 0.938 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.285 1.285 19 C -0.014 4.014 20 H 0.075 0.925 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.401 0.599 24 H 0.121 0.879 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.007 0.993 29 H 0.082 0.918 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 6.295 -1.877 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.431 6.431 4 N -0.367 5.367 5 C 0.000 4.000 6 C -0.118 4.118 7 N -0.185 5.185 8 C 0.074 3.926 9 H 0.024 0.976 10 C -0.185 4.185 11 C -0.544 4.544 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.144 4.144 20 H 0.094 0.906 21 H 0.110 0.890 22 H 0.110 0.890 23 H 0.235 0.765 24 H 0.139 0.861 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.026 0.974 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.140 7.128 -1.879 11.742 hybrid contribution -0.449 -1.662 -0.337 1.754 sum -9.589 5.466 -2.215 11.258 Atomic orbital electron populations 1.21854 0.92147 1.04086 1.05010 1.20809 0.90457 0.83771 0.75403 1.90707 1.70806 1.31486 1.50113 1.46205 1.07574 1.08514 1.74393 1.22927 0.78311 1.00526 0.98240 1.23889 0.94167 0.94978 0.98734 1.68959 1.25845 1.19299 1.04407 1.19808 0.95287 0.83577 0.93883 0.97594 1.21701 0.98796 1.01168 0.96852 1.21096 1.37273 0.96348 0.99672 0.91996 1.24938 0.95917 0.97752 0.95561 1.69911 1.47375 1.14909 1.21025 0.86447 0.79436 0.79937 0.81649 1.19709 1.20959 1.21108 1.24214 0.94848 0.99067 0.96302 0.90641 0.88961 0.88960 0.76484 0.86128 0.90224 0.91365 0.94515 0.97440 0.89980 0.92981 0.91987 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.39 36.00 0.37 -1.06 16 2 C 0.51 6.83 7.94 -10.99 -0.09 6.74 16 3 O -0.55 -9.94 16.69 5.56 0.09 -9.84 16 4 N -0.72 -9.39 5.39 -53.54 -0.29 -9.68 16 5 C 0.11 1.71 4.59 -67.71 -0.31 1.40 16 6 C 0.01 0.23 6.86 -7.56 -0.05 0.17 16 7 N -0.46 -9.94 6.12 -238.02 -1.46 -11.40 16 8 C 0.18 4.53 1.66 -68.87 -0.11 4.41 16 9 H 0.01 0.17 7.56 -51.93 -0.39 -0.22 16 10 C -0.13 -3.14 9.06 37.16 0.34 -2.80 16 11 C -0.51 -13.75 8.24 -34.44 -0.28 -14.03 16 12 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 13 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 14 N -0.89 -25.16 11.38 55.43 0.63 -24.53 16 15 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.01 -0.25 6.81 -7.55 -0.05 -0.30 16 20 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 21 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.40 4.23 8.59 -40.82 -0.35 3.88 16 24 H 0.12 2.11 7.46 -51.93 -0.39 1.73 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.07 1.25 7.79 -51.93 -0.40 0.85 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.01 0.15 7.59 -51.93 -0.39 -0.24 16 29 H 0.08 2.19 6.25 -51.93 -0.32 1.86 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 268.86 15.07 4.05 4.05 Total: -1.00 -31.12 268.86 -6.99 -38.11 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.72 Total: 1.10 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.28 Total: -3.92 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -1.11 Total: -45.61 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.12 -6.99 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307528677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.484 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds