Wall clock time and date at job start Mon Mar 30 2020 02:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21275 * 120.00046 * 2 1 4 4 N 1.34781 * 119.99649 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99635 * 179.97438 * 4 2 1 6 6 C 1.53509 * 114.17451 * 205.00133 * 5 4 2 7 7 N 1.47475 * 87.93935 * 220.33387 * 6 5 4 8 8 C 1.46893 * 111.00082 * 138.70124 * 7 6 5 9 9 H 1.08997 * 109.47475 * 308.50130 * 8 7 6 10 10 C 1.53000 * 109.46961 * 188.50243 * 8 7 6 11 11 C 1.50696 * 109.47069 * 68.50573 * 8 7 6 12 12 H 1.08001 * 120.00255 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00075 * 179.72287 * 11 8 7 14 14 N 1.31514 * 120.00127 * 0.27327 * 13 11 8 15 15 Si 1.86798 * 120.00252 * 180.27335 * 13 11 8 16 16 H 1.48498 * 109.47182 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47366 * 120.00074 * 15 13 11 18 18 H 1.48497 * 109.47317 * 239.99864 * 15 13 11 19 19 C 1.47486 * 87.83351 * 27.00843 * 7 6 5 20 20 H 1.09005 * 109.47390 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47157 * 299.99973 * 1 2 3 22 22 H 1.09001 * 109.47256 * 59.99509 * 1 2 3 23 23 H 0.96995 * 120.00361 * 0.02562 * 4 2 1 24 24 H 1.09005 * 113.38762 * 338.08762 * 5 4 2 25 25 H 1.09005 * 113.47709 * 105.56157 * 6 5 4 26 26 H 1.09004 * 113.52797 * 335.11314 * 6 5 4 27 27 H 1.08994 * 109.47352 * 293.99273 * 10 8 7 28 28 H 1.09003 * 109.47179 * 53.99808 * 10 8 7 29 29 H 1.09007 * 109.47330 * 173.99174 * 10 8 7 30 30 H 0.97003 * 120.00683 * 179.97438 * 14 13 11 31 31 H 1.08999 * 113.47358 * 87.75536 * 19 7 6 32 32 H 1.09000 * 113.47509 * 218.22356 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.2742 -2.4369 -0.5913 7 7 5.2778 -2.3785 0.4877 8 6 5.5491 -3.7175 1.0273 9 1 4.6082 -4.2008 1.2903 10 6 6.4265 -3.5964 2.2749 11 6 6.2643 -4.5423 -0.0116 12 1 6.4939 -4.1147 -0.9764 13 6 6.6301 -5.8412 0.2715 14 7 6.3502 -6.3621 1.4462 15 14 7.5234 -6.8611 -1.0135 16 1 7.7183 -6.0496 -2.2417 17 1 8.8456 -7.2793 -0.4821 18 1 6.7171 -8.0652 -1.3379 19 6 4.2748 -1.6720 1.3062 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.6958 -2.0073 0.0005 24 1 4.0783 -0.2393 -0.3742 25 1 4.6963 -2.2900 -1.5855 26 1 3.6253 -3.3109 -0.5340 27 1 7.4068 -3.2118 1.9938 28 1 5.9578 -2.9138 2.9838 29 1 6.5397 -4.5776 2.7361 30 1 6.6072 -7.2761 1.6452 31 1 3.6254 -2.3414 1.8705 32 1 4.6976 -0.8769 1.9203 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307528677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:01 Heat of formation + Delta-G solvation = -29.977188 kcal Electronic energy + Delta-G solvation = -14196.058358 eV Core-core repulsion = 11770.612430 eV Total energy + Delta-G solvation = -2425.445929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47208 -39.87102 -35.98490 -34.63470 -32.27461 -30.45165 -27.82547 -26.83794 -26.25880 -22.42592 -21.54923 -20.89405 -18.52086 -17.82250 -17.56342 -16.68744 -16.29698 -16.10379 -15.16682 -15.10447 -14.46940 -14.17220 -13.62255 -13.53110 -13.23271 -13.07591 -12.96204 -12.77871 -12.60184 -12.31180 -12.11076 -11.98121 -11.48100 -10.95667 -10.88728 -10.58411 -10.04115 -9.58341 -8.15015 -6.26926 1.40044 1.43000 1.54309 1.63576 2.24859 2.41613 3.14042 3.40100 3.52680 3.93598 3.99740 4.35758 4.51105 4.55339 4.68392 4.70940 4.76114 4.78380 4.91576 4.97347 5.04253 5.16137 5.36321 5.41135 5.51491 5.68160 6.01799 6.23722 6.48455 6.61031 6.85180 7.27303 7.42433 8.91520 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.053977 B = 0.006663 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.611359 B = 4201.397384 C = 4386.326432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.505 3.495 3 O -0.602 6.602 4 N -0.707 5.707 5 C 0.129 3.871 6 C 0.015 3.985 7 N -0.483 5.483 8 C 0.187 3.813 9 H -0.015 1.015 10 C -0.117 4.117 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.919 5.919 15 Si 0.960 3.040 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.277 1.277 19 C -0.012 4.012 20 H 0.103 0.897 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.416 0.584 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.263 0.737 31 H 0.066 0.934 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 6.293 -2.533 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.484 6.484 4 N -0.359 5.359 5 C 0.022 3.978 6 C -0.115 4.115 7 N -0.206 5.206 8 C 0.079 3.921 9 H 0.003 0.997 10 C -0.175 4.175 11 C -0.560 4.560 12 H 0.071 0.929 13 C -0.185 4.185 14 N -0.558 5.558 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.203 1.203 19 C -0.142 4.142 20 H 0.122 0.878 21 H 0.121 0.879 22 H 0.123 0.877 23 H 0.253 0.747 24 H 0.128 0.872 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.423 7.112 -2.538 12.871 hybrid contribution -0.089 -1.624 -0.117 1.631 sum -10.513 5.488 -2.655 12.152 Atomic orbital electron populations 1.21877 0.87614 1.06404 1.06110 1.21756 0.92491 0.82636 0.73671 1.90692 1.72234 1.33162 1.52285 1.46104 1.06121 1.09636 1.74028 1.22422 0.80363 0.98855 0.96158 1.23878 0.93618 0.96052 0.97966 1.68866 1.28189 1.17399 1.06161 1.19604 0.93954 0.85016 0.93486 0.99720 1.21546 0.98473 1.00238 0.97285 1.21328 1.37728 0.97070 0.99879 0.92855 1.25687 0.96574 0.98809 0.97400 1.70017 1.48061 1.15269 1.22463 0.85471 0.78227 0.78442 0.79270 1.19407 1.20755 1.20309 1.24230 0.94287 0.98703 0.97008 0.87774 0.87856 0.87658 0.74689 0.87160 0.90212 0.91260 0.95539 0.95455 0.92170 0.92812 0.91621 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.39 71.23 0.74 -1.40 16 2 C 0.50 12.53 7.94 87.66 0.70 13.23 16 3 O -0.60 -21.08 16.69 -3.01 -0.05 -21.13 16 4 N -0.71 -17.14 5.39 -441.69 -2.38 -19.52 16 5 C 0.13 4.06 4.59 45.45 0.21 4.27 16 6 C 0.01 0.53 6.86 83.57 0.57 1.10 16 7 N -0.48 -20.71 6.12 -906.95 -5.55 -26.26 16 8 C 0.19 9.40 1.66 44.17 0.07 9.47 16 9 H -0.01 -0.79 7.56 -2.39 -0.02 -0.81 16 10 C -0.12 -5.83 9.06 71.98 0.65 -5.18 16 11 C -0.52 -28.50 8.24 25.60 0.21 -28.29 16 12 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 13 C 0.01 0.78 5.30 84.65 0.45 1.23 16 14 N -0.92 -51.97 11.38 21.45 0.24 -51.73 16 15 Si 0.96 43.18 29.54 68.60 2.03 45.20 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 C -0.01 -0.42 6.81 83.57 0.57 0.15 16 20 H 0.10 0.81 7.91 -2.38 -0.02 0.79 16 21 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.42 7.69 8.59 -92.71 -0.80 6.89 16 24 H 0.11 3.81 7.46 -2.38 -0.02 3.79 16 25 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 26 H 0.07 2.49 7.79 -2.39 -0.02 2.47 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.03 1.19 7.59 -2.39 -0.02 1.17 16 29 H 0.06 3.24 6.25 -2.38 -0.01 3.23 16 30 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.07 2.31 7.68 -2.39 -0.02 2.29 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -66.73 268.86 -1.23 -67.95 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.31 Total: 10.91 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.17 Total: -5.43 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -7.68 Total: -97.51 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.05 Total: -21.13 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -66.73 -1.23 -67.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307528677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.975 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds