Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48814 * 110.99880 * 2 1 4 4 C 1.51783 * 105.68319 * 241.43113 * 3 2 1 5 5 H 1.09001 * 108.48703 * 85.55172 * 4 3 2 6 6 O 1.40619 * 120.40037 * 212.21318 * 4 3 2 7 7 C 1.44030 * 111.01301 * 184.13109 * 6 4 3 8 8 C 1.52736 * 112.02014 * 302.83852 * 7 6 4 9 9 N 1.48161 * 110.92868 * 44.56627 * 8 7 6 10 10 C 1.36930 * 122.74007 * 131.34973 * 9 8 7 11 11 H 1.08003 * 120.00417 * 314.23638 * 10 9 8 12 12 C 1.38817 * 119.99818 * 134.23602 * 10 9 8 13 13 N 1.31618 * 119.99919 * 151.61817 * 12 10 9 14 14 Si 1.86806 * 119.99903 * 331.61137 * 12 10 9 15 15 H 1.48498 * 109.46648 * 94.42880 * 14 12 10 16 16 H 1.48504 * 109.47018 * 214.42739 * 14 12 10 17 17 H 1.48493 * 109.47056 * 334.43157 * 14 12 10 18 18 C 1.45747 * 114.51794 * 311.34871 * 9 8 7 19 19 H 1.08997 * 110.96360 * 297.26745 * 18 9 8 20 20 C 1.49179 * 110.99898 * 239.61864 * 2 1 3 21 21 H 1.08997 * 109.46775 * 180.38603 * 1 2 3 22 22 H 1.09004 * 109.46796 * 300.38123 * 1 2 3 23 23 H 1.08993 * 109.47310 * 60.38173 * 1 2 3 24 24 H 1.09004 * 110.20634 * 0.48735 * 3 2 1 25 25 H 1.09002 * 110.20294 * 122.37638 * 3 2 1 26 26 H 1.09000 * 108.97592 * 182.17903 * 7 6 4 27 27 H 1.09001 * 108.96667 * 63.49131 * 7 6 4 28 28 H 1.09001 * 109.18619 * 284.19311 * 8 7 6 29 29 H 1.09003 * 109.14552 * 164.91222 * 8 7 6 30 30 H 0.97001 * 119.99904 * 179.97438 * 13 12 10 31 31 H 1.09003 * 110.64083 * 265.07559 * 20 2 1 32 32 H 1.08996 * 110.64157 * 27.96742 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0023 1.3893 0.0000 4 6 2.8018 1.5219 -1.2834 5 1 2.1208 1.8007 -2.0876 6 8 3.9368 2.3505 -1.3323 7 6 4.4819 2.4017 -2.6645 8 6 4.8393 1.0131 -3.1907 9 7 3.7603 0.0415 -2.8959 10 6 3.2469 -0.8048 -3.8420 11 1 2.9931 -0.4288 -4.8222 12 6 3.0527 -2.1460 -3.5414 13 7 2.1061 -2.8268 -4.1519 14 14 4.1350 -2.9846 -2.2706 15 1 3.4653 -2.9437 -0.9458 16 1 4.3608 -4.3976 -2.6677 17 1 5.4390 -2.2791 -2.1880 18 6 3.2900 0.0601 -1.5165 19 1 4.0884 -0.2176 -0.8285 20 6 2.0036 -0.7044 -1.2015 21 1 -0.3633 -1.0276 0.0069 22 1 -0.3633 0.5198 0.8866 23 1 -0.3633 0.5079 -0.8933 24 1 1.1822 2.1074 0.0087 25 1 2.6486 1.5445 0.8639 26 1 5.3798 3.0196 -2.6565 27 1 3.7477 2.8549 -3.3305 28 1 5.7625 0.6776 -2.7181 29 1 4.9881 1.0669 -4.2692 30 1 1.9706 -3.7641 -3.9421 31 1 2.2231 -1.7467 -0.9699 32 1 1.3003 -0.6364 -2.0313 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307570136.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = -14.301388 kcal Electronic energy + Delta-G solvation = -15394.338812 eV Core-core repulsion = 12969.572637 eV Total energy + Delta-G solvation = -2424.766175 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31550 -38.16401 -36.48100 -33.80569 -32.25281 -29.68737 -29.36668 -26.74659 -24.75714 -23.50406 -21.79365 -21.63812 -19.06483 -17.80614 -16.91505 -16.70436 -16.35493 -16.00851 -15.90585 -15.13886 -14.96551 -14.38574 -14.29470 -13.92091 -13.70977 -13.25169 -12.99297 -12.58166 -12.42876 -12.29343 -12.10783 -11.91373 -11.76188 -11.39539 -10.85930 -10.48953 -9.42837 -8.66805 -8.34218 -5.73566 1.26855 1.35351 1.46423 2.35307 2.55253 2.70351 3.05046 3.34082 3.69961 3.90042 4.11776 4.18261 4.25581 4.33263 4.43649 4.50909 4.57659 4.62507 4.68820 4.87752 4.93494 4.95541 4.98436 5.02944 5.14521 5.68427 5.87013 6.00382 6.12403 6.14436 6.84357 7.45657 8.06952 8.85090 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.017581 C = 0.012430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.522066 B = 1592.214593 C = 2252.069593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.059 3.941 4 C 0.053 3.947 5 H 0.041 0.959 6 O -0.373 6.373 7 C 0.053 3.947 8 C 0.097 3.903 9 N -0.610 5.610 10 C -0.273 4.273 11 H 0.043 0.957 12 C 0.023 3.977 13 N -0.920 5.920 14 Si 0.905 3.095 15 H -0.261 1.261 16 H -0.297 1.297 17 H -0.275 1.275 18 C 0.120 3.880 19 H 0.041 0.959 20 C 0.053 3.947 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.025 0.975 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.267 0.733 31 H 0.065 0.935 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 8.774 7.547 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.068 4.068 4 C -0.009 4.009 5 H 0.059 0.941 6 O -0.291 6.291 7 C -0.024 4.024 8 C -0.028 4.028 9 N -0.336 5.336 10 C -0.401 4.401 11 H 0.060 0.940 12 C -0.178 4.178 13 N -0.561 5.561 14 Si 0.732 3.268 15 H -0.187 1.187 16 H -0.224 1.224 17 H -0.200 1.200 18 C 0.013 3.987 19 H 0.059 0.941 20 C -0.075 4.075 21 H 0.085 0.915 22 H 0.117 0.883 23 H 0.043 0.957 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.147 0.853 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.529 8.450 8.078 11.702 hybrid contribution 0.151 -0.755 -0.932 1.209 sum 0.680 7.695 7.146 10.523 Atomic orbital electron populations 1.22626 0.86049 1.02632 1.01547 1.64578 1.09799 1.13389 1.38260 1.22434 0.98430 0.89700 0.96270 1.22911 0.88389 0.90890 0.98676 0.94144 1.87663 1.43019 1.67778 1.30608 1.23172 0.99830 0.96712 0.82651 1.21994 0.90525 0.89798 1.00438 1.44290 1.40893 1.42374 1.06050 1.18358 1.37802 0.88534 0.95440 0.93966 1.26020 0.96847 0.96572 0.98367 1.70025 1.29744 1.10246 1.46072 0.86469 0.81807 0.77570 0.80962 1.18686 1.22383 1.20030 1.21949 0.94439 0.95654 0.86701 0.94125 1.22749 0.95785 0.97964 0.90977 0.91488 0.88340 0.95682 0.89297 0.88704 0.85346 0.93108 0.95136 0.90487 0.92315 0.91672 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.19 127.69 1.17 1.75 16 2 N -0.53 -19.07 5.52 -913.39 -5.04 -24.11 16 3 C 0.06 1.88 6.84 85.53 0.59 2.47 16 4 C 0.05 1.99 2.89 31.19 0.09 2.08 16 5 H 0.04 1.65 7.94 -2.39 -0.02 1.63 16 6 O -0.37 -13.38 10.88 -145.51 -1.58 -14.96 16 7 C 0.05 1.71 6.80 71.89 0.49 2.20 16 8 C 0.10 3.80 6.66 85.97 0.57 4.37 16 9 N -0.61 -29.46 2.34 -670.66 -1.57 -31.03 16 10 C -0.27 -15.28 9.32 84.04 0.78 -14.50 16 11 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 12 C 0.02 1.28 4.27 84.86 0.36 1.65 16 13 N -0.92 -54.98 13.97 21.65 0.30 -54.68 16 14 Si 0.90 45.48 25.34 68.60 1.74 47.22 16 15 H -0.26 -12.62 5.64 99.48 0.56 -12.06 16 16 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 17 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 18 C 0.12 5.36 1.92 46.10 0.09 5.45 16 19 H 0.04 1.92 7.90 -2.39 -0.02 1.90 16 20 C 0.05 2.34 4.57 85.83 0.39 2.73 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.02 0.74 8.10 -2.39 -0.02 0.72 16 24 H 0.09 2.33 7.62 -2.39 -0.02 2.31 16 25 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.05 1.60 8.07 -2.39 -0.02 1.58 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 2.91 8.01 -2.39 -0.02 2.89 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.07 3.15 4.75 -2.39 -0.01 3.14 16 32 H 0.04 2.26 7.27 -2.39 -0.02 2.24 16 Total: -1.00 -63.59 247.12 -0.67 -64.26 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.94 Total: 5.11 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 4.54 Total: 8.19 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -6.31 Total: -109.82 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.58 Total: -14.96 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.74 Total: 47.22 kcal Total: -63.59 -0.67 -64.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307570136.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.960 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds