Wall clock time and date at job start Mon Mar 30 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46651 * 2 1 4 4 C 1.52996 * 109.82216 * 62.27361 * 3 2 1 5 5 C 1.52998 * 109.47509 * 59.48397 * 4 3 2 6 6 C 1.54374 * 109.83235 * 301.28958 * 3 2 1 7 7 C 1.55309 * 102.25388 * 219.12920 * 6 3 2 8 8 C 1.54947 * 100.93951 * 34.13321 * 7 6 3 9 9 C 1.53007 * 110.39157 * 82.51536 * 8 7 6 10 10 C 1.50697 * 110.31062 * 204.63856 * 8 7 6 11 11 H 1.08006 * 120.00011 * 356.89114 * 10 8 7 12 12 C 1.37881 * 120.00317 * 177.16763 * 10 8 7 13 13 N 1.31508 * 119.99472 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00029 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46587 * 90.00082 * 14 12 10 16 16 H 1.48498 * 109.46993 * 209.99804 * 14 12 10 17 17 H 1.48496 * 109.47148 * 330.00445 * 14 12 10 18 18 O 1.43240 * 109.82717 * 183.15549 * 3 2 1 19 19 H 1.08997 * 109.47413 * 297.96545 * 1 2 3 20 20 H 1.08995 * 109.47034 * 57.97274 * 1 2 3 21 21 H 1.08998 * 109.46695 * 177.96893 * 1 2 3 22 22 H 1.08999 * 109.47561 * 240.00421 * 2 1 3 23 23 H 1.08994 * 109.47481 * 119.99620 * 2 1 3 24 24 H 1.09002 * 109.47487 * 179.48350 * 4 3 2 25 25 H 1.09006 * 109.47315 * 299.48064 * 4 3 2 26 26 H 1.09003 * 109.46843 * 294.29613 * 5 4 3 27 27 H 1.08990 * 109.47497 * 54.29618 * 5 4 3 28 28 H 1.09001 * 109.47585 * 174.30656 * 5 4 3 29 29 H 1.08996 * 110.85048 * 337.32250 * 6 3 2 30 30 H 1.09003 * 110.85078 * 100.73774 * 6 3 2 31 31 H 1.08997 * 111.12454 * 276.21216 * 7 6 3 32 32 H 1.09002 * 111.12195 * 152.05221 * 7 6 3 33 33 H 1.08999 * 109.47036 * 181.44495 * 9 8 7 34 34 H 1.08997 * 109.47139 * 301.44120 * 9 8 7 35 35 H 1.08994 * 109.47115 * 61.44359 * 9 8 7 36 36 H 0.97003 * 119.99486 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5814 2.1549 1.2740 5 6 2.1271 1.4147 2.4968 6 6 1.5033 2.1877 -1.2410 7 6 2.7251 3.0491 -1.6620 8 6 3.8946 2.1072 -1.2802 9 6 4.1339 1.0784 -2.3872 10 6 5.1482 2.9050 -1.0290 11 1 5.1458 3.9750 -1.1758 12 6 6.2998 2.2682 -0.6172 13 7 6.3043 0.9646 -0.4443 14 14 7.8538 3.2571 -0.3066 15 1 7.8858 3.6962 1.1117 16 1 9.0424 2.4134 -0.5905 17 1 7.8684 4.4478 -1.1938 18 8 3.4703 1.4523 -0.0742 19 1 -0.3634 0.4819 0.9076 20 1 -0.3633 0.5450 -0.8712 21 1 -0.3633 -1.0270 -0.0364 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5137 0.8899 24 1 1.9553 3.1788 1.2725 25 1 0.4921 2.1660 1.3122 26 1 1.6744 0.4247 2.5541 27 1 3.2088 1.3149 2.4084 28 1 1.8865 1.9768 3.3992 29 1 1.2342 1.4848 -2.0293 30 1 0.6532 2.8172 -0.9780 31 1 2.7663 3.9775 -1.0924 32 1 2.7148 3.2481 -2.7337 33 1 4.9415 0.4085 -2.0922 34 1 3.2238 0.5010 -2.5494 35 1 4.4068 1.5929 -3.3085 36 1 7.1145 0.5166 -0.1550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307729095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:23 Heat of formation + Delta-G solvation = -66.918768 kcal Electronic energy + Delta-G solvation = -15583.561724 eV Core-core repulsion = 13260.054232 eV Total energy + Delta-G solvation = -2323.507492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08075 -34.71648 -32.22751 -31.17085 -30.46529 -28.56400 -25.42763 -24.60921 -22.93134 -21.90397 -19.38420 -18.19956 -16.40431 -15.19533 -14.68392 -14.46934 -14.04528 -13.68640 -12.79985 -12.45841 -12.41245 -12.05067 -11.93275 -11.49894 -11.38090 -11.00290 -10.89080 -10.84796 -10.66946 -10.53144 -10.43166 -10.26726 -10.08931 -9.95564 -9.48528 -9.24792 -8.85352 -8.43138 -7.79076 -5.90827 -4.05664 3.33570 3.40193 3.42651 4.46394 4.96737 5.41744 5.42463 5.49317 5.62110 5.72220 5.86677 5.89580 5.95750 6.10845 6.20011 6.28613 6.34094 6.42877 6.45937 6.51330 6.61991 6.71838 6.74447 6.84819 6.94686 6.97524 7.05034 7.14818 7.22255 7.43185 7.83698 8.17126 8.44097 8.75016 9.15969 9.64463 11.12060 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.010933 C = 0.010143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.940492 B = 2560.426445 C = 2759.959148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.103 3.897 4 C -0.118 4.118 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.143 4.143 8 C 0.233 3.767 9 C -0.145 4.145 10 C -0.523 4.523 11 H 0.060 0.940 12 C 0.081 3.919 13 N -0.860 5.860 14 Si 0.886 3.114 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 O -0.337 6.337 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.011 0.989 35 H 0.032 0.968 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 -0.118 0.674 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.062 3.938 4 C -0.155 4.155 5 C -0.202 4.202 6 C -0.182 4.182 7 C -0.181 4.181 8 C 0.195 3.805 9 C -0.203 4.203 10 C -0.561 4.561 11 H 0.078 0.922 12 C -0.124 4.124 13 N -0.496 5.496 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 O -0.257 6.257 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.030 0.970 35 H 0.051 0.949 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.718 -0.370 0.870 8.769 hybrid contribution 0.670 0.575 0.025 0.883 sum -8.048 0.206 0.895 8.101 Atomic orbital electron populations 1.21823 0.96653 1.00667 1.01503 1.21851 0.94367 0.97780 1.02311 1.21816 0.86191 0.92747 0.93070 1.21763 0.98659 0.99783 0.95336 1.21682 1.03041 0.99107 0.96337 1.23122 0.98296 0.98825 0.97963 1.23298 0.95573 0.99216 0.99974 1.19833 0.90767 0.87449 0.82417 1.22097 1.00201 1.00305 0.97697 1.21001 0.93639 0.93482 1.47966 0.92219 1.24996 0.98457 0.94750 0.94233 1.69978 1.27584 1.07719 1.44305 0.86707 0.83026 0.80201 0.78670 1.20613 1.21230 1.19919 1.88824 1.14094 1.79367 1.43400 0.92867 0.92938 0.93518 0.92142 0.91740 0.92147 0.92801 0.93504 0.91110 0.94288 0.91875 0.92282 0.91979 0.92338 0.89541 0.96981 0.94877 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.34 37.16 0.35 -1.76 16 2 C -0.13 -2.24 4.92 -26.73 -0.13 -2.38 16 3 C 0.10 2.05 0.68 -89.90 -0.06 1.98 16 4 C -0.12 -2.12 4.76 -26.73 -0.13 -2.24 16 5 C -0.14 -2.54 9.32 37.16 0.35 -2.19 16 6 C -0.14 -2.67 4.56 -24.79 -0.11 -2.78 16 7 C -0.14 -3.04 6.01 -24.48 -0.15 -3.19 16 8 C 0.23 5.87 0.72 -90.74 -0.07 5.81 16 9 C -0.15 -3.58 8.64 37.16 0.32 -3.25 16 10 C -0.52 -14.56 8.28 -34.44 -0.29 -14.85 16 11 H 0.06 1.64 7.77 -52.48 -0.41 1.23 16 12 C 0.08 2.26 5.28 -17.82 -0.09 2.17 16 13 N -0.86 -24.86 11.06 55.43 0.61 -24.25 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 18 O -0.34 -8.55 8.87 -35.23 -0.31 -8.87 16 19 H 0.05 0.71 6.63 -51.93 -0.34 0.36 16 20 H 0.05 0.71 6.88 -51.93 -0.36 0.35 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.15 7.98 -51.93 -0.41 0.74 16 23 H 0.06 1.18 6.47 -51.93 -0.34 0.84 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.83 6.59 -51.93 -0.34 0.49 16 26 H 0.05 0.75 6.72 -51.93 -0.35 0.41 16 27 H 0.07 1.47 7.58 -51.93 -0.39 1.08 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.12 7.14 -51.93 -0.37 0.75 16 30 H 0.06 0.96 7.83 -51.93 -0.41 0.55 16 31 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 32 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 33 H 0.09 2.36 6.18 -51.93 -0.32 2.04 16 34 H 0.01 0.26 7.33 -51.93 -0.38 -0.13 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 275.36 15.07 4.15 4.15 Total: -1.00 -28.95 275.36 -6.66 -35.62 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.08 Total: -0.34 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -0.01 Total: -22.69 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.61 Total: -24.25 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.31 Total: -8.87 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.95 -6.66 -35.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307729095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.302 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds