Wall clock time and date at job start Mon Mar 30 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46651 * 2 1 4 4 C 1.52996 * 109.82216 * 62.27361 * 3 2 1 5 5 C 1.52998 * 109.47509 * 59.48397 * 4 3 2 6 6 C 1.54374 * 109.83235 * 301.28958 * 3 2 1 7 7 C 1.55309 * 102.25388 * 219.12920 * 6 3 2 8 8 C 1.54947 * 100.93951 * 34.13321 * 7 6 3 9 9 C 1.53007 * 110.39157 * 82.51536 * 8 7 6 10 10 C 1.50697 * 110.31062 * 204.63856 * 8 7 6 11 11 H 1.08006 * 120.00011 * 356.89114 * 10 8 7 12 12 C 1.37881 * 120.00317 * 177.16763 * 10 8 7 13 13 N 1.31508 * 119.99472 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00029 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46587 * 90.00082 * 14 12 10 16 16 H 1.48498 * 109.46993 * 209.99804 * 14 12 10 17 17 H 1.48496 * 109.47148 * 330.00445 * 14 12 10 18 18 O 1.43240 * 109.82717 * 183.15549 * 3 2 1 19 19 H 1.08997 * 109.47413 * 297.96545 * 1 2 3 20 20 H 1.08995 * 109.47034 * 57.97274 * 1 2 3 21 21 H 1.08998 * 109.46695 * 177.96893 * 1 2 3 22 22 H 1.08999 * 109.47561 * 240.00421 * 2 1 3 23 23 H 1.08994 * 109.47481 * 119.99620 * 2 1 3 24 24 H 1.09002 * 109.47487 * 179.48350 * 4 3 2 25 25 H 1.09006 * 109.47315 * 299.48064 * 4 3 2 26 26 H 1.09003 * 109.46843 * 294.29613 * 5 4 3 27 27 H 1.08990 * 109.47497 * 54.29618 * 5 4 3 28 28 H 1.09001 * 109.47585 * 174.30656 * 5 4 3 29 29 H 1.08996 * 110.85048 * 337.32250 * 6 3 2 30 30 H 1.09003 * 110.85078 * 100.73774 * 6 3 2 31 31 H 1.08997 * 111.12454 * 276.21216 * 7 6 3 32 32 H 1.09002 * 111.12195 * 152.05221 * 7 6 3 33 33 H 1.08999 * 109.47036 * 181.44495 * 9 8 7 34 34 H 1.08997 * 109.47139 * 301.44120 * 9 8 7 35 35 H 1.08994 * 109.47115 * 61.44359 * 9 8 7 36 36 H 0.97003 * 119.99486 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5814 2.1549 1.2740 5 6 2.1271 1.4147 2.4968 6 6 1.5033 2.1877 -1.2410 7 6 2.7251 3.0491 -1.6620 8 6 3.8946 2.1072 -1.2802 9 6 4.1339 1.0784 -2.3872 10 6 5.1482 2.9050 -1.0290 11 1 5.1458 3.9750 -1.1758 12 6 6.2998 2.2682 -0.6172 13 7 6.3043 0.9646 -0.4443 14 14 7.8538 3.2571 -0.3066 15 1 7.8858 3.6962 1.1117 16 1 9.0424 2.4134 -0.5905 17 1 7.8684 4.4478 -1.1938 18 8 3.4703 1.4523 -0.0742 19 1 -0.3634 0.4819 0.9076 20 1 -0.3633 0.5450 -0.8712 21 1 -0.3633 -1.0270 -0.0364 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5137 0.8899 24 1 1.9553 3.1788 1.2725 25 1 0.4921 2.1660 1.3122 26 1 1.6744 0.4247 2.5541 27 1 3.2088 1.3149 2.4084 28 1 1.8865 1.9768 3.3992 29 1 1.2342 1.4848 -2.0293 30 1 0.6532 2.8172 -0.9780 31 1 2.7663 3.9775 -1.0924 32 1 2.7148 3.2481 -2.7337 33 1 4.9415 0.4085 -2.0922 34 1 3.2238 0.5010 -2.5494 35 1 4.4068 1.5929 -3.3085 36 1 7.1145 0.5166 -0.1550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307729095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:23 Heat of formation + Delta-G solvation = -83.285497 kcal Electronic energy + Delta-G solvation = -15584.271439 eV Core-core repulsion = 13260.054232 eV Total energy + Delta-G solvation = -2324.217207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73043 -36.38436 -34.19311 -32.83922 -31.90057 -30.32164 -27.40305 -26.28510 -24.29014 -23.49033 -21.22353 -19.75494 -18.40855 -16.86146 -16.38480 -16.19694 -15.61132 -15.32164 -14.45152 -14.24287 -13.88138 -13.67118 -13.44590 -13.06974 -12.83866 -12.82060 -12.63083 -12.46352 -12.37209 -12.27930 -12.01447 -11.94325 -11.87395 -11.55267 -11.02283 -10.90648 -10.71098 -10.51838 -9.60081 -8.01349 -6.22993 1.40344 1.41505 1.50831 2.44070 3.12567 3.62114 3.96731 4.01186 4.18748 4.29731 4.46924 4.56485 4.60392 4.65205 4.76011 4.82914 4.91955 4.98522 5.00592 5.06238 5.07523 5.13980 5.20097 5.25517 5.30184 5.40700 5.46377 5.56072 5.60843 5.70347 5.76730 6.16412 6.40038 6.72254 7.29176 7.52685 9.00223 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.010933 C = 0.010143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.940492 B = 2560.426445 C = 2759.959148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.087 3.913 4 C -0.115 4.115 5 C -0.139 4.139 6 C -0.132 4.132 7 C -0.140 4.140 8 C 0.217 3.783 9 C -0.135 4.135 10 C -0.545 4.545 11 H 0.054 0.946 12 C 0.033 3.967 13 N -0.888 5.888 14 Si 0.946 3.054 15 H -0.280 1.280 16 H -0.282 1.282 17 H -0.266 1.266 18 O -0.374 6.374 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 0.439 0.774 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.047 3.953 4 C -0.153 4.153 5 C -0.197 4.197 6 C -0.170 4.170 7 C -0.178 4.178 8 C 0.180 3.820 9 C -0.193 4.193 10 C -0.582 4.582 11 H 0.072 0.928 12 C -0.170 4.170 13 N -0.526 5.526 14 Si 0.772 3.228 15 H -0.206 1.206 16 H -0.208 1.208 17 H -0.190 1.190 18 O -0.294 6.294 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.653 0.194 0.965 10.698 hybrid contribution 1.240 0.386 0.008 1.298 sum -9.413 0.580 0.974 9.481 Atomic orbital electron populations 1.21767 0.93148 1.02236 1.02632 1.21796 0.97287 0.96023 1.00850 1.22196 0.83813 0.94511 0.94759 1.21770 1.00700 0.98458 0.94333 1.21618 1.00180 1.00409 0.97453 1.23090 0.97890 0.98616 0.97383 1.23194 0.95465 0.98551 1.00562 1.19892 0.91416 0.88092 0.82612 1.21951 0.99715 0.99916 0.97755 1.21404 0.95434 0.93587 1.47793 0.92804 1.25717 1.01380 0.95647 0.94210 1.70125 1.28104 1.09056 1.45271 0.85759 0.79573 0.79062 0.78388 1.20635 1.20772 1.19047 1.88746 1.17701 1.79581 1.43357 0.91517 0.91909 0.91878 0.94025 0.92931 0.93737 0.89180 0.92117 0.95442 0.92030 0.90931 0.89210 0.92615 0.91229 0.92800 0.95292 0.94528 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.34 71.98 0.67 -2.77 16 2 C -0.12 -4.16 4.92 30.60 0.15 -4.01 16 3 C 0.09 3.35 0.68 -10.33 -0.01 3.35 16 4 C -0.12 -3.89 4.76 30.59 0.15 -3.75 16 5 C -0.14 -4.74 9.32 71.98 0.67 -4.07 16 6 C -0.13 -4.54 4.56 31.85 0.15 -4.39 16 7 C -0.14 -5.79 6.01 32.05 0.19 -5.60 16 8 C 0.22 11.05 0.72 -10.87 -0.01 11.04 16 9 C -0.14 -6.74 8.64 71.98 0.62 -6.12 16 10 C -0.54 -30.82 8.28 25.60 0.21 -30.61 16 11 H 0.05 3.00 7.77 -2.91 -0.02 2.98 16 12 C 0.03 1.86 5.28 84.66 0.45 2.31 16 13 N -0.89 -52.92 11.06 21.45 0.24 -52.68 16 14 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 O -0.37 -19.19 8.87 -148.98 -1.32 -20.51 16 19 H 0.07 1.46 6.63 -2.39 -0.02 1.44 16 20 H 0.06 1.42 6.88 -2.39 -0.02 1.40 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.04 1.55 7.98 -2.39 -0.02 1.53 16 23 H 0.05 1.88 6.47 -2.39 -0.02 1.87 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 2.39 6.59 -2.38 -0.02 2.38 16 26 H 0.06 1.86 6.72 -2.39 -0.02 1.84 16 27 H 0.03 1.14 7.58 -2.39 -0.02 1.13 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.35 7.14 -2.39 -0.02 2.33 16 30 H 0.09 2.53 7.83 -2.39 -0.02 2.51 16 31 H 0.06 2.33 8.05 -2.39 -0.02 2.32 16 32 H 0.07 2.67 8.04 -2.39 -0.02 2.65 16 33 H 0.05 3.02 6.18 -2.39 -0.01 3.01 16 34 H 0.03 1.28 7.33 -2.39 -0.02 1.26 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -63.55 275.36 5.21 -58.34 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.03 Total: 12.77 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 3.24 Total: -44.62 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.24 Total: -52.68 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -1.32 Total: -20.51 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.55 5.21 -58.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307729095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.945 kcal (2) G-P(sol) polarization free energy of solvation -63.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds