Wall clock time and date at job start Mon Mar 30 2020 02:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 N 1.36604 * 110.99607 * 60.00550 * 12 2 1 14 14 C 1.34780 * 120.00025 * 179.97438 * 13 12 2 15 15 O 1.21280 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00226 * 179.97438 * 14 13 12 17 17 C 1.53785 * 113.61313 * 279.13939 * 16 14 13 18 18 C 1.53960 * 87.01890 * 220.04660 * 17 16 14 19 19 C 1.53783 * 87.11222 * 25.36104 * 18 17 16 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.00896 * 111.00594 * 296.04777 * 12 2 1 25 25 H 0.97001 * 119.99850 * 359.97438 * 13 12 2 26 26 H 1.08996 * 112.85274 * 50.33118 * 16 14 13 27 27 H 1.08997 * 113.61328 * 334.56468 * 17 16 14 28 28 H 1.08996 * 113.61907 * 105.47239 * 17 16 14 29 29 H 1.09003 * 113.53666 * 270.81458 * 18 17 16 30 30 H 1.08997 * 113.66651 * 139.93004 * 18 17 16 31 31 H 1.08999 * 113.61620 * 220.09592 * 19 18 17 32 32 H 1.09001 * 113.69084 * 89.19315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 7 1.5817 -1.9859 1.2310 14 6 1.9264 -2.7893 2.2569 15 8 2.6258 -2.3639 3.1517 16 6 1.4428 -4.2161 2.2920 17 6 0.0022 -4.3658 2.8090 18 6 0.4882 -5.6171 3.5629 19 6 1.8914 -4.9881 3.5441 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.7502 -0.1989 2.0373 25 1 1.0226 -2.3263 0.5151 26 1 1.6298 -4.7495 1.3600 27 1 -0.3123 -3.5549 3.4659 28 1 -0.7230 -4.5818 2.0245 29 1 0.4130 -6.5340 2.9784 30 1 0.0674 -5.7159 4.5635 31 1 2.6891 -5.7057 3.3521 32 1 2.0957 -4.3474 4.4020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308132395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:20 Heat of formation + Delta-G solvation = 2.101674 kcal Electronic energy + Delta-G solvation = -14319.634473 eV Core-core repulsion = 11895.579588 eV Total energy + Delta-G solvation = -2424.054885 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82710 -37.60219 -35.88536 -33.10958 -30.74756 -27.80352 -25.67175 -25.43102 -25.29920 -20.97366 -20.38536 -19.16860 -17.20354 -16.90374 -15.57480 -15.42548 -14.80275 -14.37494 -13.89307 -13.20404 -12.77747 -12.67257 -12.39010 -12.17374 -11.83893 -11.24997 -11.09290 -11.03581 -10.81925 -10.47739 -10.42959 -10.32445 -10.13516 -9.65339 -9.17726 -9.05292 -8.52581 -6.94038 -6.16147 -4.21942 3.22730 3.24732 3.29812 3.33224 3.68977 4.31712 4.61241 4.71147 4.84835 4.89067 5.16536 5.46271 5.64763 5.70492 5.82201 5.87586 5.88488 6.01437 6.17837 6.46729 6.49087 6.60606 6.76653 7.24223 7.51388 7.61965 7.94366 8.05439 8.25371 8.58531 8.83457 9.31749 9.46338 10.90894 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039082 B = 0.007739 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.275872 B = 3617.000976 C = 3858.967587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.191 3.809 3 H 0.060 0.940 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.444 5.444 13 N -0.549 5.549 14 C 0.509 3.491 15 O -0.555 6.555 16 C -0.133 4.133 17 C -0.126 4.126 18 C -0.142 4.142 19 C -0.115 4.115 20 H 0.026 0.974 21 H 0.095 0.905 22 H 0.011 0.989 23 H 0.263 0.737 24 H 0.316 0.684 25 H 0.402 0.598 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -9.711 6.843 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 H 0.077 0.923 4 C -0.550 4.550 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.168 5.168 13 N -0.290 5.290 14 C 0.294 3.706 15 O -0.433 6.433 16 C -0.155 4.155 17 C -0.164 4.164 18 C -0.179 4.179 19 C -0.153 4.153 20 H 0.045 0.955 21 H 0.113 0.887 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.134 0.866 25 H 0.242 0.758 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.625 -9.430 7.012 12.041 hybrid contribution -0.961 -0.186 -1.214 1.559 sum -3.586 -9.616 5.798 11.787 Atomic orbital electron populations 1.22446 1.00254 0.99265 1.01336 1.19776 0.90274 0.95229 0.86365 0.92280 1.21031 1.31391 1.13111 0.89449 0.91691 1.24946 0.94901 0.95041 0.99188 1.69853 1.36431 1.22779 1.23911 0.86511 0.79390 0.79502 0.81734 1.20269 1.21275 1.20100 1.62441 1.56462 0.91406 1.06478 1.45259 1.51465 1.07764 1.24562 1.20269 0.81361 0.87116 0.81846 1.90618 1.38427 1.75995 1.38248 1.22708 0.98187 0.93773 1.00876 1.22864 0.94799 0.98618 1.00125 1.22860 0.97093 0.97298 1.00685 1.22764 0.96559 0.98433 0.97538 0.95478 0.88657 0.97010 0.92666 0.86569 0.75753 0.87151 0.89866 0.90793 0.90081 0.91280 0.91264 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.95 37.16 0.33 -3.58 16 2 C 0.19 4.64 3.08 -68.87 -0.21 4.43 16 3 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 4 C -0.51 -13.47 7.90 -34.44 -0.27 -13.74 16 5 H 0.06 1.74 7.68 -52.49 -0.40 1.34 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.44 -9.93 6.57 -5.65 -0.04 -9.97 16 13 N -0.55 -10.94 5.15 31.22 0.16 -10.78 16 14 C 0.51 9.56 7.42 -10.99 -0.08 9.48 16 15 O -0.55 -12.27 16.13 5.56 0.09 -12.18 16 16 C -0.13 -1.85 4.14 -90.96 -0.38 -2.22 16 17 C -0.13 -1.47 7.64 -25.82 -0.20 -1.67 16 18 C -0.14 -1.43 8.09 -25.82 -0.21 -1.64 16 19 C -0.12 -1.43 7.40 -25.92 -0.19 -1.63 16 20 H 0.03 0.56 6.82 -51.93 -0.35 0.21 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.32 6.73 8.82 -181.37 -1.60 5.13 16 25 H 0.40 7.74 6.60 -185.15 -1.22 6.52 16 26 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.32 7.45 -51.93 -0.39 0.93 16 LS Contribution 266.79 15.07 4.02 4.02 Total: -1.00 -29.19 266.79 -8.26 -37.45 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.80 Total: 8.51 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.30 Total: -9.04 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.75 Total: -44.41 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.19 -8.26 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.550 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds