Wall clock time and date at job start Mon Mar 30 2020 02:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 N 1.36604 * 110.99607 * 60.00550 * 12 2 1 14 14 C 1.34780 * 120.00025 * 179.97438 * 13 12 2 15 15 O 1.21280 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00226 * 179.97438 * 14 13 12 17 17 C 1.53785 * 113.61313 * 279.13939 * 16 14 13 18 18 C 1.53960 * 87.01890 * 220.04660 * 17 16 14 19 19 C 1.53783 * 87.11222 * 25.36104 * 18 17 16 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.00896 * 111.00594 * 296.04777 * 12 2 1 25 25 H 0.97001 * 119.99850 * 359.97438 * 13 12 2 26 26 H 1.08996 * 112.85274 * 50.33118 * 16 14 13 27 27 H 1.08997 * 113.61328 * 334.56468 * 17 16 14 28 28 H 1.08996 * 113.61907 * 105.47239 * 17 16 14 29 29 H 1.09003 * 113.53666 * 270.81458 * 18 17 16 30 30 H 1.08997 * 113.66651 * 139.93004 * 18 17 16 31 31 H 1.08999 * 113.61620 * 220.09592 * 19 18 17 32 32 H 1.09001 * 113.69084 * 89.19315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 7 1.5817 -1.9859 1.2310 14 6 1.9264 -2.7893 2.2569 15 8 2.6258 -2.3639 3.1517 16 6 1.4428 -4.2161 2.2920 17 6 0.0022 -4.3658 2.8090 18 6 0.4882 -5.6171 3.5629 19 6 1.8914 -4.9881 3.5441 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.7502 -0.1989 2.0373 25 1 1.0226 -2.3263 0.5151 26 1 1.6298 -4.7495 1.3600 27 1 -0.3123 -3.5549 3.4659 28 1 -0.7230 -4.5818 2.0245 29 1 0.4130 -6.5340 2.9784 30 1 0.0674 -5.7159 4.5635 31 1 2.6891 -5.7057 3.3521 32 1 2.0957 -4.3474 4.4020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308132395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:20 Heat of formation + Delta-G solvation = -16.967258 kcal Electronic energy + Delta-G solvation = -14320.461364 eV Core-core repulsion = 11895.579588 eV Total energy + Delta-G solvation = -2424.881776 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20120 -38.96582 -37.50312 -35.01712 -32.56246 -29.42640 -27.31774 -26.86434 -26.44924 -22.54872 -22.07189 -20.27303 -18.74549 -18.57856 -17.43134 -16.73351 -16.39233 -15.76865 -15.41178 -14.93365 -14.54669 -14.17493 -13.68649 -13.35623 -13.16036 -12.96020 -12.86379 -12.67925 -12.30859 -12.10431 -12.03356 -11.42437 -11.37839 -11.25115 -11.06839 -10.64793 -10.50541 -8.66994 -8.17940 -6.30666 1.43148 1.45450 1.52755 1.76605 2.16117 2.40847 3.12870 3.59807 3.72434 3.78727 3.96006 4.11947 4.32558 4.61508 4.73851 4.78759 4.83242 4.86994 4.91076 5.06774 5.13285 5.23426 5.35626 5.56149 5.60669 5.65156 6.05272 6.22252 6.52857 6.81463 6.90390 7.39427 7.73013 8.88087 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039082 B = 0.007739 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.275872 B = 3617.000976 C = 3858.967587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.196 3.804 3 H 0.030 0.970 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.455 5.455 13 N -0.549 5.549 14 C 0.507 3.493 15 O -0.593 6.593 16 C -0.136 4.136 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.120 4.120 20 H 0.039 0.961 21 H 0.072 0.928 22 H 0.027 0.973 23 H 0.265 0.735 24 H 0.320 0.680 25 H 0.407 0.593 26 H 0.130 0.870 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -11.803 6.537 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.088 3.912 3 H 0.048 0.952 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.205 1.205 12 N -0.179 5.179 13 N -0.292 5.292 14 C 0.294 3.706 15 O -0.474 6.474 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.160 4.160 19 C -0.158 4.158 20 H 0.058 0.942 21 H 0.090 0.910 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.138 0.862 25 H 0.247 0.753 26 H 0.148 0.852 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.335 -11.534 6.715 13.757 hybrid contribution -0.710 0.492 -1.060 1.368 sum -4.044 -11.041 5.655 13.048 Atomic orbital electron populations 1.22240 0.98873 0.99899 1.00897 1.19550 0.91224 0.93751 0.86691 0.95233 1.21191 1.31555 1.13072 0.90498 0.92526 1.25650 0.94983 0.95652 1.01764 1.69970 1.37094 1.23746 1.24509 0.85558 0.78397 0.78980 0.78365 1.18989 1.20932 1.20505 1.62288 1.56992 0.92688 1.05957 1.45329 1.51811 1.06809 1.25245 1.21265 0.80172 0.88651 0.80523 1.90596 1.40105 1.77159 1.39492 1.22927 1.00070 0.90245 1.02540 1.22893 0.93517 0.99190 1.00551 1.22824 0.94455 0.97178 1.01566 1.22795 0.98782 0.98353 0.95896 0.94227 0.90970 0.95407 0.92608 0.86171 0.75260 0.85225 0.91023 0.88999 0.87768 0.90049 0.90142 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.14 8.95 71.98 0.64 -6.50 16 2 C 0.20 9.61 3.08 44.17 0.14 9.75 16 3 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.52 -27.64 7.90 25.60 0.20 -27.44 16 5 H 0.06 3.02 7.68 -2.91 -0.02 3.00 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.91 -49.90 11.32 21.45 0.24 -49.66 16 8 Si 0.96 41.82 29.54 68.60 2.03 43.85 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.46 -20.53 6.57 -171.80 -1.13 -21.65 16 13 N -0.55 -21.63 5.15 -173.53 -0.89 -22.52 16 14 C 0.51 18.72 7.42 87.66 0.65 19.37 16 15 O -0.59 -26.41 16.13 -3.03 -0.05 -26.46 16 16 C -0.14 -3.50 4.14 -11.01 -0.05 -3.54 16 17 C -0.12 -2.54 7.64 31.18 0.24 -2.30 16 18 C -0.12 -2.04 8.09 31.18 0.25 -1.79 16 19 C -0.12 -2.76 7.40 31.12 0.23 -2.53 16 20 H 0.04 1.63 6.82 -2.39 -0.02 1.61 16 21 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 22 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 24 H 0.32 13.80 8.82 -210.56 -1.86 11.95 16 25 H 0.41 15.24 6.60 -215.49 -1.42 13.81 16 26 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.98 7.45 -2.39 -0.02 1.96 16 Total: -1.00 -62.20 266.79 0.80 -61.40 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -2.16 Total: 28.56 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 2.76 Total: -13.51 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -1.78 Total: -93.83 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -62.20 0.80 -61.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.429 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds