Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46465 * 2 1 4 4 C 1.50704 * 109.46974 * 240.00100 * 2 1 3 5 5 H 1.08000 * 119.99799 * 239.99542 * 4 2 1 6 6 C 1.37875 * 119.99906 * 60.00020 * 4 2 1 7 7 N 1.31517 * 120.00180 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99994 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47159 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47420 * 119.99704 * 8 6 4 11 11 H 1.48497 * 109.47227 * 240.00010 * 8 6 4 12 12 N 1.46499 * 109.47327 * 120.00050 * 2 1 3 13 13 N 1.40105 * 119.99713 * 270.27806 * 12 2 1 14 14 C 1.28012 * 119.99605 * 179.72142 * 13 12 2 15 15 C 1.52392 * 127.57427 * 0.02957 * 14 13 12 16 16 C 1.54967 * 102.33233 * 158.99310 * 15 14 13 17 17 O 1.44473 * 103.08586 * 36.71527 * 16 15 14 18 18 C 1.43755 * 106.36302 * 320.57228 * 17 16 15 19 19 H 1.08998 * 109.96265 * 266.85804 * 18 17 16 20 20 C 1.52998 * 109.69002 * 145.91768 * 18 17 16 21 21 H 1.09000 * 109.47572 * 60.00611 * 1 2 3 22 22 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47461 * 299.99735 * 1 2 3 24 24 H 0.96996 * 119.99825 * 180.02562 * 7 6 4 25 25 H 0.97001 * 119.99790 * 89.99709 * 12 2 1 26 26 H 1.09003 * 110.82971 * 277.19797 * 15 14 13 27 27 H 1.08995 * 110.83344 * 40.78363 * 15 14 13 28 28 H 1.09005 * 110.69494 * 155.11373 * 16 15 14 29 29 H 1.08998 * 110.69297 * 278.31853 * 16 15 14 30 30 H 1.09005 * 109.47214 * 301.89380 * 20 18 17 31 31 H 1.08998 * 109.47037 * 61.88666 * 20 18 17 32 32 H 1.09000 * 109.47417 * 181.89362 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1484 -2.2856 -3.6039 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 7 2.0184 -0.6906 1.1961 13 7 2.2464 0.0290 2.3764 14 6 2.6680 -0.5754 3.4232 15 6 2.9775 -2.0595 3.5781 16 6 3.9237 -2.0740 4.8052 17 8 3.3762 -1.0399 5.6526 18 6 2.9757 0.0295 4.7794 19 1 3.7833 0.7556 4.6856 20 6 1.7256 0.7113 5.3390 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7081 1.1609 -3.4844 25 1 2.1800 -1.6467 1.1721 26 1 2.0687 -2.6256 3.7826 27 1 3.4844 -2.4442 2.6932 28 1 3.8893 -3.0412 5.3067 29 1 4.9434 -1.8289 4.5083 30 1 0.9276 -0.0236 5.4450 31 1 1.9530 1.1438 6.3133 32 1 1.4055 1.4994 4.6573 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308137557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = -32.773491 kcal Electronic energy + Delta-G solvation = -14075.399885 eV Core-core repulsion = 11649.832700 eV Total energy + Delta-G solvation = -2425.567185 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58118 -37.87886 -35.82037 -33.44497 -32.46639 -31.07013 -28.47659 -27.29421 -25.33700 -23.39119 -22.21247 -20.54919 -18.81816 -17.69186 -17.12921 -16.78153 -16.52102 -15.49940 -15.12523 -14.68601 -14.42406 -14.19021 -13.84147 -13.31276 -13.29652 -13.04739 -12.90818 -12.73130 -12.45678 -12.25245 -12.15892 -12.05491 -11.83268 -11.12974 -10.83420 -10.61615 -10.56920 -8.64263 -8.19506 -6.36422 1.39158 1.41790 1.42652 1.54202 2.06202 2.43511 2.89942 3.09715 3.68215 3.80991 4.05205 4.18327 4.37424 4.41111 4.67133 4.71332 4.85218 4.89487 4.90547 4.98409 5.03013 5.11604 5.25844 5.36226 5.54133 5.73848 5.81374 5.90797 6.18921 6.40818 6.83789 7.35474 7.78758 8.86141 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051740 B = 0.006611 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.039653 B = 4234.149164 C = 4603.076342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.308 3.692 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.644 5.644 13 N -0.228 5.228 14 C -0.018 4.018 15 C -0.146 4.146 16 C 0.058 3.942 17 O -0.377 6.377 18 C 0.144 3.856 19 H 0.086 0.914 20 C -0.138 4.138 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.017 0.983 24 H 0.267 0.733 25 H 0.373 0.627 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -5.057 12.058 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.204 3.796 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.201 1.201 11 H -0.205 1.205 12 N -0.382 5.382 13 N -0.035 5.035 14 C -0.214 4.214 15 C -0.187 4.187 16 C -0.018 4.018 17 O -0.295 6.295 18 C 0.083 3.917 19 H 0.104 0.896 20 C -0.196 4.196 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.210 0.790 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.566 -3.924 11.629 12.781 hybrid contribution 0.318 -1.319 -1.142 1.773 sum 3.884 -5.243 10.487 12.352 Atomic orbital electron populations 1.22028 0.98903 0.98994 0.99644 1.18110 0.90196 0.91589 0.79704 0.98151 1.21544 1.32454 1.13454 0.91173 0.92157 1.25715 0.94867 0.95637 1.01939 1.70023 1.36866 1.23769 1.24659 0.85318 0.78175 0.78443 0.78511 1.19108 1.20130 1.20511 1.48381 1.75839 1.07643 1.06302 1.73215 1.09024 1.27527 0.93784 1.25672 1.04634 0.95766 0.95317 1.22525 1.01538 0.93948 1.00678 1.23577 0.96088 0.92886 0.89249 1.88961 1.81233 1.29025 1.30315 1.21089 0.98075 0.88919 0.83576 0.89598 1.21792 0.95606 1.00231 1.01988 0.91257 0.95197 0.96367 0.92364 0.79023 0.89122 0.90118 0.85940 0.90852 0.92570 0.89841 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.93 9.29 71.98 0.67 -6.26 16 2 C 0.31 16.28 3.23 44.25 0.14 16.42 16 3 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 4 C -0.55 -29.93 8.74 25.60 0.22 -29.71 16 5 H 0.06 3.21 7.79 -2.91 -0.02 3.18 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -51.95 11.32 21.45 0.24 -51.70 16 8 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.64 -29.29 6.07 -172.52 -1.05 -30.34 16 13 N -0.23 -9.48 11.50 -39.17 -0.45 -9.93 16 14 C -0.02 -0.59 6.91 47.38 0.33 -0.26 16 15 C -0.15 -3.87 6.23 31.07 0.19 -3.67 16 16 C 0.06 1.23 7.75 72.65 0.56 1.79 16 17 O -0.38 -9.61 11.22 -148.98 -1.67 -11.28 16 18 C 0.14 3.94 3.97 30.15 0.12 4.06 16 19 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 20 C -0.14 -3.46 9.59 71.98 0.69 -2.77 16 21 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.37 15.71 7.39 -213.32 -1.58 14.14 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 2.15 7.61 -2.39 -0.02 2.13 16 28 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.04 270.57 2.00 -59.04 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.48 Total: 18.64 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 3.38 Total: -18.94 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -1.26 Total: -91.97 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -1.67 Total: -11.28 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -61.04 2.00 -59.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308137557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.269 kcal (2) G-P(sol) polarization free energy of solvation -61.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds