Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1 14 14 C 1.28010 * 120.00236 * 180.02562 * 13 12 2 15 15 C 1.52395 * 127.57435 * 359.68483 * 14 13 12 16 16 C 1.55199 * 102.22318 * 158.90324 * 15 14 13 17 17 O 1.44464 * 102.96126 * 37.05570 * 16 15 14 18 18 C 1.43733 * 106.47941 * 320.61822 * 17 16 15 19 19 H 1.09004 * 109.81700 * 266.51781 * 18 17 16 20 20 C 1.52992 * 109.88521 * 145.62146 * 18 17 16 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97006 * 119.99969 * 270.00430 * 12 2 1 26 26 H 1.08997 * 110.82832 * 277.20740 * 15 14 13 27 27 H 1.09001 * 110.83115 * 40.78388 * 15 14 13 28 28 H 1.09001 * 110.92178 * 278.61064 * 16 15 14 29 29 H 1.09002 * 110.57362 * 155.33299 * 16 15 14 30 30 H 1.09007 * 109.47444 * 301.75784 * 20 18 17 31 31 H 1.09002 * 109.47541 * 61.76116 * 20 18 17 32 32 H 1.08997 * 109.47466 * 181.75980 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6781 -0.5733 -3.4202 15 6 2.9935 -2.0564 -3.5735 16 6 2.9159 -2.2516 -5.1111 17 8 3.4755 -1.0219 -5.6226 18 6 2.9863 0.0317 -4.7762 19 1 2.0798 0.4593 -5.2048 20 6 4.0529 1.1186 -4.6290 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7089 1.1611 3.4845 25 1 2.1799 -1.6467 -1.1723 26 1 3.9934 -2.2803 -3.2018 27 1 2.2451 -2.6662 -3.0674 28 1 1.8824 -2.3694 -5.4369 29 1 3.5179 -3.1064 -5.4196 30 1 4.9617 0.6822 -4.2143 31 1 4.2700 1.5495 -5.6064 32 1 3.6872 1.8986 -3.9613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308137560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = -13.682575 kcal Electronic energy + Delta-G solvation = -14071.926244 eV Core-core repulsion = 11647.186903 eV Total energy + Delta-G solvation = -2424.739341 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37467 -36.24861 -34.01757 -31.75892 -31.22953 -29.58070 -26.84077 -25.23715 -24.12247 -22.16003 -20.40088 -19.05584 -17.19678 -16.01925 -15.85859 -15.33648 -14.96119 -13.96518 -13.68270 -13.12155 -13.08484 -12.50210 -12.25733 -12.17124 -11.88970 -11.33100 -11.24199 -11.06757 -10.97880 -10.80486 -10.36606 -10.24066 -10.12567 -9.69567 -9.33676 -8.99948 -8.52698 -6.95640 -6.15145 -4.23486 2.82514 3.24174 3.28939 3.30214 3.64873 3.98072 4.33896 4.89195 5.05546 5.16921 5.23142 5.24573 5.51045 5.55040 5.67231 5.88714 5.98156 6.08535 6.14207 6.38204 6.72883 6.89712 6.98260 7.03249 7.15069 7.56669 7.77208 7.85300 8.15350 8.30647 8.84399 9.35168 9.43515 10.90803 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050117 B = 0.006480 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.558742 B = 4320.062231 C = 4457.672834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.630 5.630 13 N -0.181 5.181 14 C -0.041 4.041 15 C -0.142 4.142 16 C 0.056 3.944 17 O -0.373 6.373 18 C 0.146 3.854 19 H 0.076 0.924 20 C -0.142 4.142 21 H 0.012 0.988 22 H 0.025 0.975 23 H 0.090 0.910 24 H 0.265 0.735 25 H 0.369 0.631 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -3.781 -11.138 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.197 3.803 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.367 5.367 13 N 0.009 4.991 14 C -0.236 4.236 15 C -0.182 4.182 16 C -0.021 4.021 17 O -0.291 6.291 18 C 0.086 3.914 19 H 0.093 0.907 20 C -0.200 4.200 21 H 0.031 0.969 22 H 0.044 0.956 23 H 0.108 0.892 24 H 0.075 0.925 25 H 0.205 0.795 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.495 -2.605 -10.635 11.231 hybrid contribution 0.357 -1.768 0.965 2.046 sum 2.853 -4.373 -9.670 10.990 Atomic orbital electron populations 1.22212 0.99139 0.99121 1.00498 1.18502 0.90050 0.93511 0.78268 0.94134 1.21201 1.32295 1.13294 0.90261 0.92325 1.24858 0.94819 0.94996 0.98926 1.69882 1.35980 1.22493 1.24028 0.86486 0.79187 0.79599 0.81710 1.21032 1.20176 1.20182 1.48873 1.73813 1.07636 1.06380 1.73168 1.05770 1.26773 0.93418 1.24906 1.09251 0.93620 0.95841 1.22424 1.02632 0.95816 0.97351 1.23419 0.98694 0.87960 0.92030 1.88936 1.71695 1.16066 1.52451 1.20940 0.96973 0.87882 0.85557 0.90654 1.21830 0.98658 0.97560 1.01938 0.96903 0.95602 0.89184 0.92488 0.79529 0.89852 0.90375 0.91972 0.89047 0.92160 0.92187 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.29 37.16 0.35 -3.38 16 2 C 0.30 7.68 3.23 -69.09 -0.22 7.46 16 3 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.53 -14.36 8.74 -34.44 -0.30 -14.66 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.63 -14.12 6.07 -5.88 -0.04 -14.15 16 13 N -0.18 -3.76 11.50 36.24 0.42 -3.34 16 14 C -0.04 -0.71 6.91 -77.60 -0.54 -1.24 16 15 C -0.14 -2.03 6.24 -25.88 -0.16 -2.19 16 16 C 0.06 0.68 7.77 38.32 0.30 0.98 16 17 O -0.37 -5.36 11.22 -35.23 -0.40 -5.75 16 18 C 0.15 2.17 3.97 -27.42 -0.11 2.06 16 19 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.14 -1.93 9.60 37.15 0.36 -1.57 16 21 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.37 7.73 7.38 -182.59 -1.35 6.38 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.09 7.60 -51.93 -0.39 0.70 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 270.59 15.07 4.08 4.08 Total: -1.00 -28.42 270.59 -6.58 -35.01 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.83 Total: 3.35 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.43 Total: -10.84 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 1.01 Total: -41.61 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.40 Total: -5.75 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.42 -6.58 -35.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308137560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.323 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds