Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1 14 14 C 1.28010 * 120.00236 * 180.02562 * 13 12 2 15 15 C 1.52395 * 127.57435 * 359.68483 * 14 13 12 16 16 C 1.55199 * 102.22318 * 158.90324 * 15 14 13 17 17 O 1.44464 * 102.96126 * 37.05570 * 16 15 14 18 18 C 1.43733 * 106.47941 * 320.61822 * 17 16 15 19 19 H 1.09004 * 109.81700 * 266.51781 * 18 17 16 20 20 C 1.52992 * 109.88521 * 145.62146 * 18 17 16 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97006 * 119.99969 * 270.00430 * 12 2 1 26 26 H 1.08997 * 110.82832 * 277.20740 * 15 14 13 27 27 H 1.09001 * 110.83115 * 40.78388 * 15 14 13 28 28 H 1.09001 * 110.92178 * 278.61064 * 16 15 14 29 29 H 1.09002 * 110.57362 * 155.33299 * 16 15 14 30 30 H 1.09007 * 109.47444 * 301.75784 * 20 18 17 31 31 H 1.09002 * 109.47541 * 61.76116 * 20 18 17 32 32 H 1.08997 * 109.47466 * 181.75980 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6781 -0.5733 -3.4202 15 6 2.9935 -2.0564 -3.5735 16 6 2.9159 -2.2516 -5.1111 17 8 3.4755 -1.0219 -5.6226 18 6 2.9863 0.0317 -4.7762 19 1 2.0798 0.4593 -5.2048 20 6 4.0529 1.1186 -4.6290 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7089 1.1611 3.4845 25 1 2.1799 -1.6467 -1.1723 26 1 3.9934 -2.2803 -3.2018 27 1 2.2451 -2.6662 -3.0674 28 1 1.8824 -2.3694 -5.4369 29 1 3.5179 -3.1064 -5.4196 30 1 4.9617 0.6822 -4.2143 31 1 4.2700 1.5495 -5.6064 32 1 3.6872 1.8986 -3.9613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308137560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = -32.581237 kcal Electronic energy + Delta-G solvation = -14072.745752 eV Core-core repulsion = 11647.186903 eV Total energy + Delta-G solvation = -2425.558849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57386 -37.87762 -35.81954 -33.44643 -32.45597 -31.06424 -28.47841 -27.28739 -25.34127 -23.38508 -22.22304 -20.54562 -18.80212 -17.70398 -17.09358 -16.80475 -16.51239 -15.56797 -15.11851 -14.50351 -14.41401 -14.32042 -13.81885 -13.38425 -13.26838 -12.97271 -12.95534 -12.77142 -12.41881 -12.25605 -12.15058 -12.06924 -11.82059 -11.14300 -10.85591 -10.58274 -10.57639 -8.64262 -8.19133 -6.36267 1.39075 1.42384 1.43972 1.51845 2.06211 2.43614 2.89320 3.09829 3.68436 3.80594 4.05310 4.18347 4.37417 4.41229 4.66888 4.71479 4.85124 4.89275 4.90905 4.98479 5.02788 5.11604 5.26033 5.36038 5.53872 5.74683 5.81132 5.91136 6.19183 6.40721 6.83543 7.35475 7.78788 8.85998 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050117 B = 0.006480 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.558742 B = 4320.062231 C = 4457.672834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.308 3.692 3 H 0.000 1.000 4 C -0.550 4.550 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.970 3.030 9 H -0.280 1.280 10 H -0.267 1.267 11 H -0.273 1.273 12 N -0.644 5.644 13 N -0.228 5.228 14 C -0.018 4.018 15 C -0.147 4.147 16 C 0.059 3.941 17 O -0.378 6.378 18 C 0.145 3.855 19 H 0.088 0.912 20 C -0.139 4.139 21 H 0.018 0.982 22 H 0.029 0.971 23 H 0.069 0.931 24 H 0.267 0.733 25 H 0.373 0.627 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 -5.146 -12.203 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.205 3.795 3 H 0.018 0.982 4 C -0.589 4.589 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.794 3.206 9 H -0.205 1.205 10 H -0.192 1.192 11 H -0.199 1.199 12 N -0.382 5.382 13 N -0.035 5.035 14 C -0.214 4.214 15 C -0.187 4.187 16 C -0.017 4.017 17 O -0.296 6.296 18 C 0.084 3.916 19 H 0.105 0.895 20 C -0.197 4.197 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.210 0.790 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.163 -3.980 -11.722 12.777 hybrid contribution 0.206 -1.360 1.095 1.758 sum 3.369 -5.339 -10.627 12.361 Atomic orbital electron populations 1.22025 0.98836 0.99027 0.99661 1.18096 0.90232 0.91555 0.79658 0.98192 1.21497 1.32632 1.13553 0.91237 0.92197 1.25708 0.94839 0.95626 1.01893 1.70009 1.36771 1.23669 1.24783 0.85437 0.78561 0.78705 0.77867 1.20535 1.19217 1.19859 1.48383 1.75740 1.07507 1.06538 1.73212 1.09170 1.27348 0.93816 1.25675 1.04408 0.95768 0.95573 1.22567 1.02952 0.93670 0.99513 1.23623 1.00228 0.88011 0.89865 1.88943 1.71962 1.16593 1.52131 1.21074 0.97940 0.88373 0.84179 0.89458 1.21798 0.97860 0.96956 1.03089 0.96328 0.95138 0.91265 0.92340 0.79028 0.89351 0.89968 0.90606 0.86049 0.92739 0.89776 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.90 9.29 71.98 0.67 -6.23 16 2 C 0.31 16.32 3.23 44.24 0.14 16.46 16 3 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 4 C -0.55 -30.17 8.74 25.60 0.22 -29.95 16 5 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.95 11.32 21.45 0.24 -51.70 16 8 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.64 -29.30 6.07 -172.53 -1.05 -30.35 16 13 N -0.23 -9.48 11.50 -39.17 -0.45 -9.93 16 14 C -0.02 -0.60 6.91 47.38 0.33 -0.27 16 15 C -0.15 -3.87 6.24 31.15 0.19 -3.68 16 16 C 0.06 1.23 7.77 72.74 0.57 1.79 16 17 O -0.38 -9.63 11.22 -148.98 -1.67 -11.30 16 18 C 0.14 3.96 3.97 30.15 0.12 4.08 16 19 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 20 C -0.14 -3.54 9.60 71.98 0.69 -2.85 16 21 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 24 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.37 15.70 7.38 -213.31 -1.57 14.13 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 2.15 7.60 -2.39 -0.02 2.13 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -61.09 270.59 2.01 -59.08 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.47 Total: 18.77 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.38 Total: -19.12 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -1.26 Total: -91.98 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.67 Total: -11.30 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -61.09 2.01 -59.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308137560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.499 kcal (2) G-P(sol) polarization free energy of solvation -61.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds