Wall clock time and date at job start Mon Mar 30 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.54603 * 303.57865 * 5 4 3 7 7 C 1.54991 * 110.62005 * 180.52850 * 5 4 3 8 8 C 1.54811 * 102.09049 * 204.47571 * 7 5 4 9 9 C 1.54100 * 104.19006 * 20.87810 * 8 7 5 10 10 C 1.53001 * 109.87818 * 242.60886 * 9 8 7 11 11 C 1.50695 * 110.00356 * 121.52477 * 9 8 7 12 12 H 1.07997 * 120.00115 * 0.63872 * 11 9 8 13 13 C 1.37881 * 120.00171 * 180.64130 * 11 9 8 14 14 N 1.31514 * 119.99719 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 120.00432 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47092 * 59.99672 * 15 13 11 17 17 H 1.48500 * 109.47389 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47173 * 300.00405 * 15 13 11 19 19 O 1.43739 * 107.29170 * 2.03065 * 9 8 7 20 20 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 22 22 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 23 23 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 24 24 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 26 26 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 27 27 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 29 29 H 1.09005 * 110.90481 * 322.66823 * 7 5 4 30 30 H 1.08995 * 110.91209 * 86.27746 * 7 5 4 31 31 H 1.09006 * 110.48759 * 262.20096 * 8 7 5 32 32 H 1.09000 * 110.60126 * 139.60780 * 8 7 5 33 33 H 1.08998 * 109.47039 * 179.28322 * 10 9 8 34 34 H 1.09004 * 109.47014 * 299.27954 * 10 9 8 35 35 H 1.08996 * 109.47241 * 59.28407 * 10 9 8 36 36 H 0.96996 * 120.00462 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6755 3.4335 -0.8509 7 6 5.6294 2.9163 -0.0127 8 6 5.9311 4.2987 0.6154 9 6 4.6443 4.6526 1.3857 10 6 4.0173 5.9183 0.7975 11 6 4.9587 4.8668 2.8438 12 1 5.9752 4.7735 3.1964 13 6 3.9486 5.1819 3.7279 14 7 2.7107 5.2950 3.2986 15 14 4.3382 5.4467 5.5354 16 1 5.3003 6.5693 5.6751 17 1 3.0886 5.7723 6.2686 18 1 4.9357 4.2097 6.0994 19 8 3.7398 3.5452 1.2383 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6765 1.9564 -0.8900 26 1 1.6764 1.9564 0.8900 27 1 3.9329 0.9289 0.8909 28 1 3.9336 0.9287 -0.8892 29 1 6.0396 2.1131 0.5994 30 1 6.0113 2.8605 -1.0321 31 1 6.1254 5.0371 -0.1627 32 1 6.7785 4.2331 1.2979 33 1 3.1013 6.1552 1.3387 34 1 4.7186 6.7477 0.8895 35 1 3.7853 5.7536 -0.2547 36 1 2.0001 5.5170 3.9204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308138158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:20 Heat of formation + Delta-G solvation = -92.149280 kcal Electronic energy + Delta-G solvation = -14893.620526 eV Core-core repulsion = 12569.018957 eV Total energy + Delta-G solvation = -2324.601569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20168 -36.64256 -34.84976 -32.62656 -32.49214 -30.08302 -27.41420 -26.41678 -23.66304 -21.89613 -21.51321 -21.00355 -18.67475 -17.09185 -16.62480 -15.98804 -15.62167 -15.07642 -14.78696 -14.29432 -14.13907 -14.03381 -13.49491 -13.19308 -12.92038 -12.76884 -12.63369 -12.54523 -12.27040 -12.10828 -11.92330 -11.89085 -11.71045 -11.36386 -11.19118 -10.99419 -10.86904 -10.55844 -9.77849 -8.02042 -6.24513 1.40944 1.42626 1.49791 2.43624 3.12264 3.66732 3.82982 4.08096 4.17066 4.28112 4.31368 4.40395 4.49886 4.67213 4.73817 4.77569 4.89866 4.94579 5.00253 5.05011 5.06457 5.10423 5.17629 5.23086 5.32756 5.35141 5.39831 5.45314 5.56435 5.60520 5.69315 6.13532 6.37704 6.65384 7.14482 7.49738 8.99016 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026958 B = 0.009674 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.390866 B = 2893.538259 C = 3489.232184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.113 4.113 4 C -0.100 4.100 5 C 0.054 3.946 6 H 0.047 0.953 7 C -0.137 4.137 8 C -0.141 4.141 9 C 0.209 3.791 10 C -0.140 4.140 11 C -0.545 4.545 12 H 0.055 0.945 13 C 0.030 3.970 14 N -0.889 5.889 15 Si 0.950 3.050 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.275 1.275 19 O -0.376 6.376 20 H 0.068 0.932 21 H 0.039 0.961 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -7.568 -7.691 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.004 4.004 6 H 0.065 0.935 7 C -0.175 4.175 8 C -0.179 4.179 9 C 0.171 3.829 10 C -0.198 4.198 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.172 4.172 14 N -0.526 5.526 15 Si 0.775 3.225 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.200 1.200 19 O -0.296 6.296 20 H 0.087 0.913 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.261 -7.577 -7.488 10.656 hybrid contribution 0.139 0.595 1.059 1.222 sum 0.400 -6.981 -6.430 9.500 Atomic orbital electron populations 1.21768 0.95562 1.02057 1.01459 1.21506 0.96235 0.95596 1.02221 1.21479 0.95359 0.97371 1.00841 1.21548 0.95865 0.94063 1.02249 1.23212 0.93888 0.94249 0.89049 0.93535 1.23054 0.96108 0.96950 1.01346 1.22982 0.98903 0.97120 0.98866 1.19735 0.85212 0.84287 0.93692 1.22036 1.01971 0.98723 0.97092 1.21449 0.93853 1.49089 0.93912 0.92672 1.25769 0.94928 0.93937 1.02569 1.70108 1.00227 1.46789 1.35466 0.85767 0.77553 0.78696 0.80471 1.19214 1.20956 1.20015 1.89191 1.57998 1.44576 1.37843 0.91298 0.94164 0.92405 0.90389 0.92669 0.92283 0.94884 0.92916 0.88783 0.91476 0.88945 0.91521 0.92323 0.92409 0.94365 0.95556 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.91 71.98 0.71 -2.83 16 2 C -0.12 -3.02 5.93 30.60 0.18 -2.84 16 3 C -0.11 -3.70 5.13 30.60 0.16 -3.54 16 4 C -0.10 -3.29 4.99 30.60 0.15 -3.14 16 5 C 0.05 2.16 3.27 31.28 0.10 2.26 16 6 H 0.05 1.82 8.13 -2.38 -0.02 1.80 16 7 C -0.14 -4.87 6.59 31.89 0.21 -4.66 16 8 C -0.14 -5.90 6.27 31.58 0.20 -5.71 16 9 C 0.21 10.76 0.74 -11.17 -0.01 10.75 16 10 C -0.14 -7.09 8.38 71.98 0.60 -6.48 16 11 C -0.55 -31.07 8.26 25.60 0.21 -30.86 16 12 H 0.06 3.07 7.34 -2.91 -0.02 3.05 16 13 C 0.03 1.72 5.26 84.66 0.45 2.17 16 14 N -0.89 -53.13 10.94 21.45 0.23 -52.90 16 15 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 19 O -0.38 -19.79 9.72 -148.98 -1.45 -21.24 16 20 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.03 1.35 7.92 -2.39 -0.02 1.33 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 2.35 8.06 -2.38 -0.02 2.33 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.52 7.70 -2.38 -0.02 2.50 16 32 H 0.06 2.47 7.41 -2.39 -0.02 2.45 16 33 H 0.06 3.27 6.06 -2.39 -0.01 3.26 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 1.17 8.13 -2.39 -0.02 1.15 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -63.97 286.74 4.79 -59.19 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.01 Total: 13.10 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 2.97 Total: -44.88 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.23 Total: -52.90 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -1.45 Total: -21.24 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.97 4.79 -59.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308138158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.963 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds