Wall clock time and date at job start Mon Mar 30 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47131 * 180.02562 * 4 3 2 6 6 H 1.08993 * 110.55253 * 54.30507 * 5 4 3 7 7 C 1.55005 * 110.61676 * 177.18067 * 5 4 3 8 8 C 1.54807 * 102.08836 * 155.52667 * 7 5 4 9 9 C 1.54099 * 104.19041 * 339.11736 * 8 7 5 10 10 C 1.53005 * 109.87600 * 117.39946 * 9 8 7 11 11 C 1.50707 * 109.87921 * 238.54570 * 9 8 7 12 12 H 1.07995 * 119.99803 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99835 * 179.97438 * 11 9 8 14 14 N 1.31512 * 119.99463 * 179.97438 * 13 11 9 15 15 Si 1.86798 * 120.00024 * 0.02562 * 13 11 9 16 16 H 1.48502 * 109.47149 * 89.99988 * 15 13 11 17 17 H 1.48493 * 109.47053 * 209.99730 * 15 13 11 18 18 H 1.48493 * 109.47387 * 330.00031 * 15 13 11 19 19 O 1.43884 * 107.37730 * 358.10417 * 9 8 7 20 20 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 24 24 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 25 25 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 26 26 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 27 27 H 1.09000 * 109.47380 * 300.00763 * 4 3 2 28 28 H 1.09001 * 109.46997 * 60.00426 * 4 3 2 29 29 H 1.09002 * 110.90427 * 273.72324 * 7 5 4 30 30 H 1.08989 * 110.90544 * 37.32939 * 7 5 4 31 31 H 1.09005 * 110.49142 * 97.79847 * 8 7 5 32 32 H 1.09007 * 110.48673 * 220.30604 * 8 7 5 33 33 H 1.08996 * 109.47401 * 60.00103 * 10 9 8 34 34 H 1.09005 * 109.46556 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.46945 * 299.99296 * 10 9 8 36 36 H 0.97002 * 119.99767 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6458 3.4439 0.8301 7 6 5.6281 2.9165 0.0733 8 6 5.9542 4.2903 -0.5614 9 6 4.6981 4.6334 -1.3855 10 6 4.0494 5.9069 -0.8393 11 6 5.0715 4.8255 -2.8329 12 1 6.0997 4.7156 -3.1445 13 6 4.1003 5.1406 -3.7595 14 7 4.4263 5.3087 -5.0224 15 14 2.3218 5.3300 -3.2206 16 1 2.0672 6.7430 -2.8416 17 1 1.4225 4.9477 -4.3387 18 1 2.0618 4.4498 -2.0532 19 8 3.7847 3.5292 -1.2566 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 3.9330 0.9287 0.8908 28 1 3.9337 0.9286 -0.8892 29 1 5.9702 2.8747 1.1074 30 1 6.0612 2.1052 -0.5115 31 1 6.1186 5.0392 0.2134 32 1 6.8283 4.2138 -1.2083 33 1 4.7584 6.7323 -0.9037 34 1 3.1619 6.1431 -1.4264 35 1 3.7654 5.7522 0.2016 36 1 3.7431 5.5307 -5.6742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308138160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:26 Heat of formation + Delta-G solvation = -85.806694 kcal Electronic energy + Delta-G solvation = -15005.829797 eV Core-core repulsion = 12681.503263 eV Total energy + Delta-G solvation = -2324.326534 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46954 -36.70136 -34.89110 -32.98862 -32.79715 -30.49821 -27.40927 -26.51549 -23.78279 -21.90409 -21.64449 -21.06803 -18.95896 -17.25610 -16.96419 -16.09575 -15.55464 -15.18833 -14.86769 -14.68976 -14.40899 -14.09573 -13.96684 -13.57124 -12.96791 -12.85091 -12.70270 -12.57674 -12.31390 -11.95216 -11.92769 -11.78484 -11.72531 -11.38373 -11.30080 -11.06000 -10.80825 -10.69647 -9.99067 -8.34574 -6.44390 1.30218 1.39370 1.65261 2.39691 2.94078 3.49561 3.78564 4.01744 4.12947 4.20867 4.27395 4.30474 4.45949 4.54519 4.62263 4.69858 4.71835 4.80983 4.87887 4.93137 4.99476 5.05777 5.11806 5.15690 5.21310 5.26340 5.31432 5.41426 5.50773 5.54886 5.56821 5.68795 6.24959 6.51104 6.78464 7.32346 8.80214 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.011366 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.859284 B = 2462.833428 C = 3082.474155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.105 4.105 5 C 0.056 3.944 6 H 0.067 0.933 7 C -0.138 4.138 8 C -0.131 4.131 9 C 0.182 3.818 10 C -0.156 4.156 11 C -0.516 4.516 12 H 0.037 0.963 13 C 0.026 3.974 14 N -0.944 5.944 15 Si 0.941 3.059 16 H -0.278 1.278 17 H -0.313 1.313 18 H -0.210 1.210 19 O -0.390 6.390 20 H 0.059 0.941 21 H 0.041 0.959 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.065 0.935 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 -7.709 14.917 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.143 4.143 5 C -0.001 4.001 6 H 0.085 0.915 7 C -0.175 4.175 8 C -0.169 4.169 9 C 0.144 3.856 10 C -0.213 4.213 11 C -0.553 4.553 12 H 0.056 0.944 13 C -0.172 4.172 14 N -0.584 5.584 15 Si 0.769 3.231 16 H -0.205 1.205 17 H -0.242 1.242 18 H -0.133 1.133 19 O -0.311 6.311 20 H 0.078 0.922 21 H 0.060 0.940 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.792 -7.738 14.623 17.224 hybrid contribution -0.353 0.546 -0.765 1.004 sum -5.146 -7.192 13.858 16.440 Atomic orbital electron populations 1.21780 0.95551 1.02050 1.01579 1.21523 0.96231 0.95873 1.02227 1.21553 0.95245 0.97415 1.01276 1.21603 0.95918 0.94166 1.02574 1.23304 0.94262 0.94457 0.88115 0.91510 1.23075 0.96019 0.96686 1.01725 1.22816 0.97777 0.97795 0.98524 1.20058 0.87157 0.84815 0.93617 1.22412 1.00029 0.99120 0.99754 1.21343 0.94446 1.47002 0.92534 0.94427 1.25874 1.03690 0.93168 0.94488 1.70058 1.35607 1.49555 1.03226 0.86092 0.79295 0.78822 0.78889 1.20541 1.24163 1.13252 1.89212 1.58187 1.45681 1.38045 0.92173 0.94011 0.91591 0.90430 0.92843 0.94548 0.91463 0.88470 0.93021 0.88151 0.91847 0.90049 0.92974 0.91813 0.95184 0.91587 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.12 -2.71 5.93 30.60 0.18 -2.53 16 3 C -0.12 -3.26 5.15 30.59 0.16 -3.11 16 4 C -0.11 -3.01 4.98 30.59 0.15 -2.86 16 5 C 0.06 1.91 3.25 31.28 0.10 2.01 16 6 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 7 C -0.14 -4.35 6.59 31.90 0.21 -4.14 16 8 C -0.13 -5.05 6.26 31.58 0.20 -4.86 16 9 C 0.18 8.53 0.70 -11.16 -0.01 8.52 16 10 C -0.16 -6.60 8.09 71.98 0.58 -6.02 16 11 C -0.52 -30.41 8.88 25.60 0.23 -30.18 16 12 H 0.04 2.43 7.58 -2.91 -0.02 2.41 16 13 C 0.03 1.60 5.45 84.66 0.46 2.06 16 14 N -0.94 -61.31 13.96 21.45 0.30 -61.01 16 15 Si 0.94 48.18 23.91 68.60 1.64 49.82 16 16 H -0.28 -13.57 6.87 99.48 0.68 -12.88 16 17 H -0.31 -16.23 7.11 99.48 0.71 -15.53 16 18 H -0.21 -10.21 5.38 99.48 0.54 -9.67 16 19 O -0.39 -17.93 7.41 -148.98 -1.10 -19.04 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 1.25 7.99 -2.39 -0.02 1.24 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.07 8.06 -2.39 -0.02 2.05 16 31 H 0.08 2.66 7.70 -2.38 -0.02 2.64 16 32 H 0.05 2.17 7.41 -2.38 -0.02 2.15 16 33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.03 1.35 3.17 -2.38 -0.01 1.35 16 35 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 36 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -68.73 277.68 4.63 -64.10 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.82 Total: 9.61 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 2.98 Total: -43.49 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.30 Total: -61.01 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.10 Total: -19.04 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.64 Total: 49.82 kcal Total: -68.73 4.63 -64.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308138160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.709 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds