Wall clock time and date at job start Mon Mar 30 2020 02:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47081 * 2 1 4 4 C 1.36942 * 120.00309 * 264.12051 * 3 2 1 5 5 H 1.07994 * 120.00004 * 187.93479 * 4 3 2 6 6 C 1.38810 * 119.99581 * 7.93039 * 4 3 2 7 7 N 1.31622 * 120.00219 * 25.75348 * 6 4 3 8 8 Si 1.86798 * 120.00188 * 205.74542 * 6 4 3 9 9 H 1.48506 * 109.46816 * 84.99406 * 8 6 4 10 10 H 1.48494 * 109.47388 * 204.98852 * 8 6 4 11 11 H 1.48500 * 109.47154 * 324.99528 * 8 6 4 12 12 C 1.46496 * 119.99986 * 84.12509 * 3 2 1 13 13 C 1.53002 * 109.47164 * 269.99687 * 12 3 2 14 14 H 1.09004 * 110.21295 * 63.06636 * 13 12 3 15 15 C 1.54470 * 110.24974 * 184.99922 * 13 12 3 16 16 C 1.54635 * 101.76711 * 144.41649 * 15 13 12 17 17 C 1.51278 * 104.19409 * 335.20289 * 16 15 13 18 18 O 1.21282 * 124.94476 * 196.21417 * 17 16 15 19 19 N 1.34426 * 110.11414 * 16.25012 * 17 16 15 20 20 H 1.08997 * 109.46456 * 299.99749 * 1 2 3 21 21 H 1.08993 * 109.46823 * 59.99932 * 1 2 3 22 22 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47059 * 240.00182 * 2 1 3 24 24 H 1.08999 * 109.47025 * 120.00479 * 2 1 3 25 25 H 0.96996 * 120.00336 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.47612 * 150.00136 * 12 3 2 27 27 H 1.08998 * 109.47533 * 29.99601 * 12 3 2 28 28 H 1.08998 * 110.97087 * 26.29950 * 15 13 12 29 29 H 1.08997 * 110.97482 * 262.53560 * 15 13 12 30 30 H 1.09001 * 110.48204 * 93.88261 * 16 15 13 31 31 H 1.09002 * 110.48593 * 216.52444 * 16 15 13 32 32 H 0.97000 * 124.34312 * 180.40608 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3612 1.9863 -1.1797 5 1 2.8401 2.9542 -1.1708 6 6 2.0931 1.3554 -2.3867 7 7 1.1112 0.4828 -2.4695 8 14 3.1257 1.7451 -3.8938 9 1 4.3483 0.9020 -3.8876 10 1 2.3371 1.4643 -5.1203 11 1 3.5128 3.1786 -3.8715 12 6 2.1401 2.1151 1.2620 13 6 0.8296 2.8489 1.5537 14 1 0.0186 2.1329 1.6869 15 6 0.9787 3.7286 2.8147 16 6 0.1070 4.9527 2.4501 17 6 0.1007 4.9662 0.9374 18 8 -0.2302 5.9109 0.2525 19 7 0.5145 3.7786 0.4627 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.9237 0.0423 -3.3130 26 1 2.9520 2.8383 1.1851 27 1 2.3523 1.4153 2.0703 28 1 2.0178 4.0209 2.9658 29 1 0.5866 3.2188 3.6947 30 1 -0.9052 4.8283 2.8348 31 1 0.5537 5.8682 2.8380 32 1 0.5945 3.5638 -0.4798 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308186152.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:15 Heat of formation + Delta-G solvation = -34.468410 kcal Electronic energy + Delta-G solvation = -14887.334116 eV Core-core repulsion = 12461.693434 eV Total energy + Delta-G solvation = -2425.640683 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11193 -38.34322 -36.79105 -33.31718 -31.96007 -31.39749 -29.50238 -26.23741 -24.37813 -22.34938 -21.89237 -20.99923 -18.75090 -18.02238 -17.26570 -16.81326 -15.84835 -15.58726 -15.19802 -14.57921 -14.29108 -14.07983 -13.84764 -13.55696 -13.28896 -12.98581 -12.77410 -12.61854 -12.33679 -12.23997 -11.85616 -11.72677 -11.44208 -11.24021 -10.78266 -10.33216 -9.86970 -8.80119 -7.82794 -5.10483 1.45313 1.50263 1.54178 1.71820 2.52913 2.71627 3.28671 3.49789 3.75508 3.90235 4.12032 4.40815 4.56134 4.66637 4.80389 4.86567 4.91134 5.06573 5.16021 5.18302 5.25298 5.32617 5.45887 5.62999 5.85017 6.05834 6.19938 6.33714 6.42569 7.23163 7.40169 7.96685 8.34112 9.18304 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030937 B = 0.011302 C = 0.009519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.860018 B = 2476.819621 C = 2940.796539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 N -0.610 5.610 4 C -0.249 4.249 5 H 0.066 0.934 6 C -0.043 4.043 7 N -0.907 5.907 8 Si 0.940 3.060 9 H -0.290 1.290 10 H -0.302 1.302 11 H -0.283 1.283 12 C 0.140 3.860 13 C 0.100 3.900 14 H 0.072 0.928 15 C -0.113 4.113 16 C -0.142 4.142 17 C 0.492 3.508 18 O -0.612 6.612 19 N -0.709 5.709 20 H 0.032 0.968 21 H 0.051 0.949 22 H 0.030 0.970 23 H 0.053 0.947 24 H 0.030 0.970 25 H 0.245 0.755 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 1.326 12.820 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.332 5.332 4 C -0.379 4.379 5 H 0.083 0.917 6 C -0.239 4.239 7 N -0.553 5.553 8 Si 0.771 3.229 9 H -0.217 1.217 10 H -0.230 1.230 11 H -0.209 1.209 12 C 0.013 3.987 13 C -0.007 4.007 14 H 0.090 0.910 15 C -0.152 4.152 16 C -0.182 4.182 17 C 0.280 3.720 18 O -0.496 6.496 19 N -0.360 5.360 20 H 0.051 0.949 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.039 1.697 12.466 12.581 hybrid contribution 0.318 -0.042 -2.000 2.026 sum 0.357 1.655 10.466 10.602 Atomic orbital electron populations 1.22180 0.98766 0.98615 0.99989 1.20705 0.92785 0.84446 0.97895 1.44355 1.75899 1.10694 1.02205 1.19289 1.31283 1.02622 0.84668 0.91660 1.25193 0.98832 1.00704 0.99172 1.70295 1.27587 1.32695 1.24762 0.85691 0.79316 0.77385 0.80514 1.21713 1.22951 1.20861 1.21381 0.94215 0.94885 0.88234 1.22791 0.99954 0.91751 0.86174 0.90982 1.22724 1.01477 0.93980 0.96987 1.22334 1.04113 1.02001 0.89739 1.21916 0.75150 0.81626 0.93305 1.90649 1.53012 1.38963 1.66994 1.46742 1.64673 1.13759 1.10871 0.94948 0.93002 0.95143 0.92869 0.95146 0.94557 0.93289 0.89903 0.88953 0.86136 0.86399 0.86934 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 9.60 71.98 0.69 -5.03 16 2 C 0.17 7.27 5.64 86.38 0.49 7.75 16 3 N -0.61 -26.67 2.46 -702.00 -1.73 -28.40 16 4 C -0.25 -12.54 7.88 84.03 0.66 -11.87 16 5 H 0.07 3.36 7.94 -2.91 -0.02 3.33 16 6 C -0.04 -2.27 4.89 84.86 0.41 -1.86 16 7 N -0.91 -49.43 8.62 21.65 0.19 -49.24 16 8 Si 0.94 44.42 29.62 68.60 2.03 46.45 16 9 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 C 0.14 4.65 5.40 86.38 0.47 5.11 16 13 C 0.10 3.01 3.63 45.44 0.16 3.17 16 14 H 0.07 2.22 6.08 -2.39 -0.01 2.21 16 15 C -0.11 -2.22 6.69 31.65 0.21 -2.01 16 16 C -0.14 -3.28 6.86 30.59 0.21 -3.07 16 17 C 0.49 18.14 8.43 87.90 0.74 18.88 16 18 O -0.61 -28.33 18.03 -3.04 -0.05 -28.38 16 19 N -0.71 -27.02 5.69 -439.44 -2.50 -29.52 16 20 H 0.03 1.20 6.05 -2.39 -0.01 1.18 16 21 H 0.05 2.59 6.33 -2.39 -0.02 2.58 16 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 2.70 5.85 -2.38 -0.01 2.69 16 24 H 0.03 1.15 7.98 -2.39 -0.02 1.14 16 25 H 0.24 13.33 8.31 -92.71 -0.77 12.56 16 26 H 0.05 1.66 7.98 -2.38 -0.02 1.64 16 27 H 0.08 2.29 7.95 -2.39 -0.02 2.27 16 28 H 0.09 1.63 7.88 -2.39 -0.02 1.61 16 29 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.40 18.59 7.17 -92.71 -0.66 17.93 16 Total: -1.00 -63.61 256.84 2.43 -61.17 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.45 Total: 16.84 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 4.05 Total: 11.09 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -4.04 Total: -107.17 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.05 Total: -28.38 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -63.61 2.43 -61.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186152.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.705 kcal (2) G-P(sol) polarization free energy of solvation -63.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds