Wall clock time and date at job start Mon Mar 30 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.53002 * 109.46924 * 119.99749 * 2 1 3 5 5 C 1.52998 * 109.46826 * 65.00635 * 4 2 1 6 6 C 1.53002 * 109.46826 * 180.02562 * 5 4 2 7 7 O 1.42903 * 109.47496 * 64.99267 * 6 5 4 8 8 C 1.50702 * 109.47226 * 184.99663 * 6 5 4 9 9 H 1.07999 * 119.99712 * 29.30674 * 8 6 5 10 10 C 1.37867 * 120.00101 * 209.30829 * 8 6 5 11 11 N 1.31519 * 120.00184 * 3.31873 * 10 8 6 12 12 Si 1.86801 * 120.00172 * 183.31692 * 10 8 6 13 13 H 1.48507 * 109.46714 * 60.00558 * 12 10 8 14 14 H 1.48501 * 109.47188 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47324 * 300.00513 * 12 10 8 16 16 C 1.53002 * 109.46733 * 304.99528 * 6 5 4 17 17 C 1.53005 * 117.49829 * 254.40364 * 16 6 5 18 18 C 1.53005 * 117.49986 * 185.74654 * 16 6 5 19 19 H 1.09000 * 109.46627 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46842 * 299.99948 * 1 2 3 21 21 H 1.09000 * 109.46859 * 60.00123 * 1 2 3 22 22 H 1.08995 * 109.47083 * 240.00271 * 2 1 3 23 23 H 1.09004 * 109.46771 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47102 * 300.00108 * 3 2 1 25 25 H 1.08994 * 109.47353 * 59.99801 * 3 2 1 26 26 H 1.09006 * 109.46662 * 185.00093 * 4 2 1 27 27 H 1.08996 * 109.47428 * 305.00152 * 4 2 1 28 28 H 1.09004 * 109.46640 * 299.98907 * 5 4 2 29 29 H 1.08996 * 109.47511 * 59.99568 * 5 4 2 30 30 H 0.96704 * 113.99352 * 60.00146 * 7 6 5 31 31 H 0.97005 * 120.00357 * 174.99114 * 11 10 8 32 32 H 1.08998 * 115.55472 * 40.07563 * 16 6 5 33 33 H 1.08999 * 117.49983 * 0.02562 * 17 16 6 34 34 H 1.09001 * 117.49787 * 145.02138 * 17 16 6 35 35 H 1.08993 * 117.50231 * 214.97698 * 18 16 6 36 36 H 1.09008 * 117.49392 * 0.02562 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6354 -2.1954 1.1879 6 6 2.1448 -2.9165 2.4375 7 8 1.4866 -2.3914 3.5922 8 6 1.8542 -4.3906 2.3205 9 1 1.8121 -4.8570 1.3474 10 6 1.6419 -5.1436 3.4557 11 7 1.6283 -4.5641 4.6363 12 14 1.3737 -6.9871 3.3171 13 1 2.5635 -7.6144 2.6877 14 1 1.1692 -7.5608 4.6714 15 1 0.1747 -7.2514 2.4818 16 6 3.6541 -2.7032 2.5697 17 6 4.5669 -3.8822 2.2267 18 6 4.3793 -3.4582 3.6856 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1264 -0.6443 1.2952 27 1 1.6054 -0.2617 2.1370 28 1 0.5490 -2.2723 1.1421 29 1 2.0700 -2.6549 0.3002 30 1 0.5250 -2.4923 3.5766 31 1 1.4073 -5.0802 5.4274 32 1 4.0108 -1.7027 2.3248 33 1 4.0923 -4.8097 1.9066 34 1 5.5243 -3.6573 1.7565 35 1 5.2132 -2.9546 4.1745 36 1 3.7811 -4.1072 4.3252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308200977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:04 Heat of formation + Delta-G solvation = -54.250530 kcal Electronic energy + Delta-G solvation = -15114.755231 eV Core-core repulsion = 12791.797075 eV Total energy + Delta-G solvation = -2322.958156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.65534 -37.21039 -35.68420 -33.86915 -31.80696 -28.29895 -27.95334 -25.28795 -23.50630 -22.74895 -21.00694 -20.00585 -18.55532 -16.68478 -16.40747 -16.18717 -16.09672 -15.25782 -14.84861 -14.32590 -14.22145 -13.53712 -13.31208 -13.02706 -12.79149 -12.75599 -12.64349 -12.36137 -12.12858 -11.89906 -11.87266 -11.43083 -11.32019 -11.21218 -10.86780 -10.81247 -10.53417 -10.27634 -9.81031 -7.82906 -6.11667 1.39996 1.43481 1.47830 2.45382 3.24728 3.32396 4.03949 4.07208 4.15104 4.23502 4.39813 4.55638 4.62638 4.80020 4.82451 4.90132 4.92249 4.96683 5.00840 5.05913 5.08258 5.17897 5.25421 5.37256 5.48304 5.49431 5.57870 5.66245 5.70708 5.80425 5.93271 6.05327 6.33054 6.86410 7.49172 7.81717 9.04486 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036587 B = 0.009620 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.113660 B = 2909.760561 C = 3219.631224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.141 4.141 4 C -0.102 4.102 5 C -0.121 4.121 6 C 0.264 3.736 7 O -0.547 6.547 8 C -0.562 4.562 9 H 0.044 0.956 10 C 0.043 3.957 11 N -0.864 5.864 12 Si 0.923 3.077 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.276 1.276 16 C -0.133 4.133 17 C -0.162 4.162 18 C -0.184 4.184 19 H 0.046 0.954 20 H 0.050 0.950 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.349 0.651 31 H 0.251 0.749 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 6.992 -7.154 10.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.139 4.139 5 C -0.159 4.159 6 C 0.224 3.776 7 O -0.350 6.350 8 C -0.600 4.600 9 H 0.062 0.938 10 C -0.160 4.160 11 N -0.501 5.501 12 Si 0.750 3.250 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.201 1.201 16 C -0.151 4.151 17 C -0.199 4.199 18 C -0.221 4.221 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.192 0.808 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.154 7.099 -6.771 9.878 hybrid contribution -0.779 -1.475 0.059 1.669 sum 0.375 5.624 -6.712 8.765 Atomic orbital electron populations 1.21843 0.95172 1.01407 1.01699 1.21154 0.96179 0.96542 0.97698 1.21801 1.00861 0.95282 1.01928 1.21568 0.99980 0.94921 0.97429 1.22099 0.99652 0.95289 0.98825 1.18314 0.87252 0.89853 0.82169 1.86390 1.21474 1.82274 1.44817 1.21770 1.50805 0.95377 0.92083 0.93762 1.25498 0.94896 1.00238 0.95353 1.70311 1.46279 1.35605 0.97893 0.86188 0.78518 0.83437 0.76831 1.20224 1.21432 1.20129 1.22333 0.94716 0.94303 1.03774 1.22849 0.99332 0.99456 0.98242 1.22891 1.01844 1.05179 0.92225 0.93509 0.93095 0.91657 0.91702 0.92803 0.91594 0.92983 0.92801 0.93287 0.93340 0.93552 0.80763 0.93932 0.89473 0.89872 0.88696 0.90533 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.95 71.99 0.64 -3.07 16 2 C -0.10 -2.66 2.92 -10.79 -0.03 -2.69 16 3 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 4 C -0.10 -3.48 4.22 30.59 0.13 -3.35 16 5 C -0.12 -4.86 4.22 30.59 0.13 -4.73 16 6 C 0.26 12.60 0.71 -11.54 -0.01 12.59 16 7 O -0.55 -28.04 10.17 -148.98 -1.51 -29.55 16 8 C -0.56 -29.40 5.84 25.60 0.15 -29.25 16 9 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 10 C 0.04 2.28 4.57 84.65 0.39 2.67 16 11 N -0.86 -47.97 9.72 21.44 0.21 -47.76 16 12 Si 0.92 42.64 29.54 68.60 2.03 44.67 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 C -0.13 -6.03 5.07 -10.79 -0.05 -6.08 16 17 C -0.16 -6.94 9.74 30.62 0.30 -6.64 16 18 C -0.18 -8.62 9.90 30.62 0.30 -8.31 16 19 H 0.05 1.31 6.56 -2.39 -0.02 1.30 16 20 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 23 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.86 6.04 -2.38 -0.01 1.85 16 27 H 0.05 1.79 7.82 -2.39 -0.02 1.78 16 28 H 0.05 1.95 6.56 -2.39 -0.02 1.93 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.35 17.31 9.00 -74.05 -0.67 16.64 16 31 H 0.25 13.61 8.32 -92.70 -0.77 12.84 16 32 H 0.09 3.65 5.94 -2.39 -0.01 3.64 16 33 H 0.08 3.90 6.59 -2.39 -0.02 3.89 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.09 5.09 5.35 -2.38 -0.01 5.07 16 Total: -1.00 -56.49 279.35 3.71 -52.78 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.38 Total: 31.28 kcal Atomic # 6 Polarization: -54.03 SS G_CDS: 2.61 Total: -51.43 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.21 Total: -47.76 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.51 Total: -29.55 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -56.49 3.71 -52.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308200977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.468 kcal (2) G-P(sol) polarization free energy of solvation -56.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds