Wall clock time and date at job start Mon Mar 30 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00308 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00246 * 180.02562 * 12 2 1 14 14 C 1.50706 * 120.00094 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47280 * 179.97438 * 14 12 2 16 16 C 1.47476 * 110.99695 * 74.03300 * 15 14 12 17 17 C 1.53517 * 87.93523 * 138.70135 * 16 15 14 18 18 C 1.47480 * 110.99482 * 170.00127 * 15 14 12 19 19 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 20 20 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 21 21 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 22 22 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 23 23 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 24 24 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.46865 * 300.00571 * 14 12 2 26 26 H 1.09004 * 109.46641 * 59.99818 * 14 12 2 27 27 H 1.09006 * 113.47711 * 253.46467 * 16 15 14 28 28 H 1.09001 * 113.47892 * 23.93317 * 16 15 14 29 29 H 1.08996 * 114.17333 * 220.32881 * 17 16 15 30 30 H 1.08996 * 114.34449 * 87.63002 * 17 16 15 31 31 H 1.09000 * 113.48138 * 336.06008 * 18 15 14 32 32 H 1.09000 * 113.47812 * 106.53558 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0017 15 7 2.3401 -3.5888 0.0014 16 6 2.9724 -3.7437 1.3247 17 6 2.8217 -5.2623 1.1574 18 6 1.6531 -4.8715 0.2416 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.6084 2.0285 0.5138 23 1 3.1500 1.1384 0.5139 24 1 4.0302 4.4439 -0.8505 25 1 0.7591 -2.5294 0.8919 26 1 0.7585 -2.5306 -0.8881 27 1 4.0100 -3.4108 1.3519 28 1 2.3766 -3.3356 2.1412 29 1 2.5214 -5.7839 2.0661 30 1 3.6527 -5.7420 0.6404 31 1 0.7052 -4.7644 0.7691 32 1 1.5725 -5.4944 -0.6492 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308212217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:58 Heat of formation + Delta-G solvation = -17.585462 kcal Electronic energy + Delta-G solvation = -14283.014525 eV Core-core repulsion = 11858.105942 eV Total energy + Delta-G solvation = -2424.908583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35592 -39.78391 -36.54674 -34.76861 -32.14740 -29.74712 -27.40422 -26.78155 -26.31425 -24.18813 -20.79940 -20.09311 -18.73374 -17.92650 -17.42649 -16.87538 -16.64702 -16.13625 -15.70309 -15.04969 -14.51519 -13.89582 -13.83595 -13.49651 -13.46058 -13.24689 -13.06424 -12.80075 -12.56518 -12.30129 -12.22231 -11.90000 -11.73662 -11.53654 -10.66143 -10.56909 -9.77008 -9.43251 -8.24680 -6.39791 1.34197 1.37887 1.48293 1.82536 2.26953 2.40717 3.04374 3.14320 3.53636 3.74741 3.93392 4.19542 4.29189 4.42339 4.45837 4.51309 4.70726 4.76808 4.86171 4.90649 5.00131 5.00180 5.18244 5.27245 5.37256 5.53959 5.81839 6.04027 6.05844 6.67855 6.78196 7.26500 7.49778 8.82437 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048860 B = 0.007063 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.922566 B = 3963.265079 C = 4089.089968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.614 5.614 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.492 3.508 13 O -0.585 6.585 14 C 0.017 3.983 15 N -0.494 5.494 16 C -0.004 4.004 17 C -0.130 4.130 18 C 0.003 3.997 19 H 0.057 0.943 20 H 0.099 0.901 21 H 0.071 0.929 22 H 0.025 0.975 23 H -0.005 1.005 24 H 0.268 0.732 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -15.023 3.434 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.347 5.347 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.281 3.719 13 O -0.465 6.465 14 C -0.114 4.114 15 N -0.217 5.217 16 C -0.133 4.133 17 C -0.168 4.168 18 C -0.125 4.125 19 H 0.076 0.924 20 H 0.118 0.882 21 H 0.090 0.910 22 H 0.043 0.957 23 H 0.013 0.987 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.609 -14.702 2.867 17.277 hybrid contribution 0.055 0.984 -0.109 0.991 sum -8.554 -13.719 2.759 16.401 Atomic orbital electron populations 1.21927 0.77765 1.04022 1.02462 1.48221 1.08484 1.06322 1.71646 1.18757 0.91078 0.80394 0.95964 1.21703 1.36961 1.06553 0.93082 0.93164 1.25883 0.94800 0.96386 1.02168 1.70045 1.38949 1.14811 1.33079 0.85391 0.78237 0.78146 0.78886 1.18493 1.20445 1.20029 1.21263 0.87999 0.86386 0.76269 1.90632 1.16555 1.87906 1.51412 1.22619 0.95034 0.88767 1.04995 1.68873 1.20914 1.01876 1.30026 1.23752 1.00585 0.97945 0.91013 1.23069 0.98891 0.93999 1.00819 1.23922 0.97471 0.90538 1.00558 0.92405 0.88232 0.90988 0.95659 0.98698 0.92326 0.88366 0.86382 0.92852 0.90891 0.87910 0.89282 0.88891 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 10.29 127.77 1.31 3.72 16 2 N -0.61 -27.04 2.86 -851.11 -2.43 -29.47 16 3 C 0.26 14.56 5.20 85.63 0.45 15.00 16 4 C -0.54 -32.66 9.39 25.60 0.24 -32.42 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.38 5.46 84.65 0.46 0.85 16 7 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 8 Si 0.97 46.24 29.54 68.60 2.03 48.27 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.49 21.61 7.51 87.66 0.66 22.26 16 13 O -0.59 -32.38 15.34 -3.03 -0.05 -32.42 16 14 C 0.02 0.50 3.86 85.56 0.33 0.83 16 15 N -0.49 -14.90 6.06 -932.57 -5.65 -20.55 16 16 C 0.00 -0.11 6.71 83.58 0.56 0.45 16 17 C -0.13 -2.44 8.48 30.94 0.26 -2.18 16 18 C 0.00 0.06 7.70 83.58 0.64 0.70 16 19 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.10 2.04 6.44 -2.39 -0.02 2.02 16 21 H 0.07 2.09 7.89 -2.39 -0.02 2.07 16 22 H 0.03 1.42 7.89 -2.38 -0.02 1.40 16 23 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.10 2.15 6.82 -2.39 -0.02 2.13 16 26 H 0.12 3.01 8.11 -2.38 -0.02 2.99 16 27 H 0.05 1.85 8.13 -2.38 -0.02 1.83 16 28 H 0.07 1.85 7.70 -2.39 -0.02 1.83 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.27 7.77 -2.39 -0.02 1.26 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -78.81 269.87 0.18 -78.63 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.09 Total: 3.67 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 4.92 Total: 9.21 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -7.80 Total: -107.35 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.81 0.18 -78.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308212217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.041 kcal (2) G-P(sol) polarization free energy of solvation -78.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds