Wall clock time and date at job start Mon Mar 30 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46731 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00313 * 2 1 3 5 5 H 1.07999 * 119.99662 * 245.37276 * 4 2 1 6 6 C 1.37875 * 120.00120 * 65.37261 * 4 2 1 7 7 N 1.31515 * 119.99748 * 184.89036 * 6 4 2 8 8 Si 1.86794 * 120.00196 * 5.16703 * 6 4 2 9 9 H 1.48500 * 109.47373 * 269.72603 * 8 6 4 10 10 H 1.48505 * 109.47126 * 29.72474 * 8 6 4 11 11 H 1.48499 * 109.47207 * 149.72425 * 8 6 4 12 12 N 1.46495 * 109.47130 * 120.00222 * 2 1 3 13 13 C 1.34777 * 120.00120 * 274.99902 * 12 2 1 14 14 O 1.21291 * 119.99910 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00409 * 180.02562 * 13 12 2 16 16 N 1.46901 * 109.47275 * 180.02562 * 15 13 12 17 17 C 1.47470 * 111.00249 * 74.02678 * 16 15 13 18 18 C 1.53512 * 87.93158 * 138.70303 * 17 16 15 19 19 C 1.47478 * 110.99806 * 170.00270 * 16 15 13 20 20 H 1.09000 * 109.47127 * 54.97478 * 1 2 3 21 21 H 1.08997 * 109.46920 * 174.97504 * 1 2 3 22 22 H 1.09000 * 109.47026 * 294.97471 * 1 2 3 23 23 H 0.97000 * 120.00553 * 355.27176 * 7 6 4 24 24 H 0.96997 * 120.00507 * 94.99817 * 12 2 1 25 25 H 1.09002 * 109.46677 * 300.00341 * 15 13 12 26 26 H 1.09003 * 109.46788 * 60.00127 * 15 13 12 27 27 H 1.08997 * 113.48073 * 253.47145 * 17 16 15 28 28 H 1.09007 * 113.47871 * 23.94130 * 17 16 15 29 29 H 1.09005 * 114.16890 * 220.32607 * 18 17 16 30 30 H 1.08997 * 114.34445 * 87.63895 * 18 17 16 31 31 H 1.09000 * 113.47662 * 336.05599 * 19 16 15 32 32 H 1.08996 * 113.47957 * 106.53010 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1782 -2.4797 7 7 2.1461 -0.8447 -3.5570 8 14 0.9742 1.4929 -2.6418 9 1 -0.4987 1.3176 -2.7140 10 1 1.3161 2.3282 -1.4625 11 1 1.4542 2.1615 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6500 -0.7286 3.5874 16 7 2.6987 0.2151 4.7122 17 6 1.3437 0.5095 5.2142 18 6 1.9136 0.4281 6.6373 19 6 2.9558 -0.4891 5.9822 20 1 -0.3633 0.5898 -0.8416 21 1 -0.3633 -1.0237 -0.0900 22 1 -0.3633 0.4339 0.9316 23 1 2.6359 -1.6778 -3.4732 24 1 2.2490 -1.6318 1.1526 25 1 1.9778 -1.5509 3.8324 26 1 3.6493 -1.1203 3.3978 27 1 0.9874 1.5039 4.9454 28 1 0.6185 -0.2733 4.9915 29 1 1.2616 -0.0755 7.3510 30 1 2.3191 1.3673 7.0133 31 1 2.6608 -1.5383 5.9644 32 1 3.9658 -0.3409 6.3642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308267901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:27 Heat of formation + Delta-G solvation = -28.252977 kcal Electronic energy + Delta-G solvation = -14244.074503 eV Core-core repulsion = 11818.703342 eV Total energy + Delta-G solvation = -2425.371161 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36161 -39.85830 -36.79545 -34.47963 -32.56094 -30.96349 -26.97203 -26.79103 -26.08552 -22.70727 -21.26847 -20.78082 -19.82495 -18.00060 -17.48477 -16.81995 -16.54803 -16.03181 -15.51336 -15.04605 -14.65220 -14.38299 -14.28174 -13.60793 -13.52573 -13.33207 -13.09526 -12.50642 -12.37749 -11.99713 -11.93227 -11.71834 -11.55682 -10.98458 -10.74779 -10.70182 -9.94974 -9.80206 -8.81141 -6.50466 1.38821 1.49569 1.67056 1.74232 2.33034 2.38233 3.01123 3.13630 3.56641 3.80703 3.97555 4.23923 4.29648 4.41763 4.46402 4.48949 4.62692 4.72173 4.74460 4.84929 4.98944 5.00409 5.25550 5.32931 5.38341 5.60300 5.61166 5.96321 6.02220 6.48288 6.83952 7.24980 7.44355 8.58478 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065161 B = 0.006914 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.602735 B = 4048.992212 C = 4263.433029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.238 3.762 3 H 0.021 0.979 4 C -0.604 4.604 5 H 0.042 0.958 6 C -0.010 4.010 7 N -0.935 5.935 8 Si 1.082 2.918 9 H -0.256 1.256 10 H -0.270 1.270 11 H -0.285 1.285 12 N -0.706 5.706 13 C 0.499 3.501 14 O -0.581 6.581 15 C 0.009 3.991 16 N -0.488 5.488 17 C -0.003 4.003 18 C -0.132 4.132 19 C 0.001 3.999 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.258 0.742 24 H 0.404 0.596 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 -1.913 18.844 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.133 3.867 3 H 0.039 0.961 4 C -0.642 4.642 5 H 0.061 0.939 6 C -0.210 4.210 7 N -0.571 5.571 8 Si 0.906 3.094 9 H -0.181 1.181 10 H -0.196 1.196 11 H -0.212 1.212 12 N -0.356 5.356 13 C 0.286 3.714 14 O -0.461 6.461 15 C -0.122 4.122 16 N -0.211 5.211 17 C -0.132 4.132 18 C -0.169 4.169 19 C -0.128 4.128 20 H 0.066 0.934 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.239 0.761 25 H 0.113 0.887 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.887 0.505 17.496 17.605 hybrid contribution 0.452 -2.425 0.533 2.523 sum -1.436 -1.920 18.029 18.188 Atomic orbital electron populations 1.22260 0.97552 1.01367 0.99646 1.18866 0.91507 0.93225 0.83113 0.96131 1.22349 1.39542 1.09813 0.92496 0.93945 1.26853 0.96603 1.05851 0.91694 1.70930 1.37989 1.17044 1.31108 0.83507 0.77297 0.72419 0.76208 1.18129 1.19558 1.21175 1.46113 1.65815 1.14246 1.09406 1.21204 0.77510 0.87310 0.85398 1.90629 1.52007 1.17794 1.85702 1.22619 1.04060 0.95125 0.90401 1.68883 1.19455 1.30866 1.01905 1.23763 0.91618 1.01860 0.95992 1.23074 0.97962 1.00875 0.95016 1.23923 1.01695 0.98052 0.89085 0.93381 0.92316 0.93867 0.93283 0.76120 0.88676 0.86372 0.92144 0.90968 0.88167 0.89074 0.89283 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.61 9.07 71.98 0.65 -5.95 16 2 C 0.24 11.59 2.14 44.25 0.09 11.69 16 3 H 0.02 1.13 6.08 -2.39 -0.01 1.12 16 4 C -0.60 -33.35 9.10 25.60 0.23 -33.12 16 5 H 0.04 2.45 7.95 -2.91 -0.02 2.43 16 6 C -0.01 -0.59 5.43 84.65 0.46 -0.13 16 7 N -0.93 -57.28 13.70 21.45 0.29 -56.98 16 8 Si 1.08 51.79 25.28 68.60 1.73 53.52 16 9 H -0.26 -11.16 6.82 99.48 0.68 -10.49 16 10 H -0.27 -12.69 6.35 99.48 0.63 -12.06 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 N -0.71 -28.39 5.07 -446.09 -2.26 -30.65 16 13 C 0.50 19.11 7.63 87.66 0.67 19.78 16 14 O -0.58 -27.30 15.43 -3.06 -0.05 -27.35 16 15 C 0.01 0.25 5.31 85.56 0.45 0.70 16 16 N -0.49 -13.17 6.06 -932.66 -5.65 -18.82 16 17 C 0.00 -0.08 6.71 83.58 0.56 0.48 16 18 C -0.13 -2.20 8.47 30.94 0.26 -1.94 16 19 C 0.00 0.01 7.70 83.57 0.64 0.65 16 20 H 0.05 2.11 4.41 -2.39 -0.01 2.10 16 21 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.26 15.78 8.72 -92.71 -0.81 14.97 16 24 H 0.40 14.07 8.53 -92.71 -0.79 13.28 16 25 H 0.10 1.95 7.56 -2.39 -0.02 1.93 16 26 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 28 H 0.07 1.63 7.70 -2.38 -0.02 1.61 16 29 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.17 7.77 -2.39 -0.02 1.15 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -70.29 263.07 -1.72 -72.02 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.18 Total: 16.11 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.03 Total: -7.84 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -7.62 Total: -106.46 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.73 Total: 53.52 kcal Total: -70.29 -1.72 -72.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308267901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.763 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds