Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99913 * 2 1 4 4 C 1.46903 * 111.00123 * 123.94839 * 2 1 3 5 5 H 1.09004 * 109.46936 * 45.79944 * 4 2 1 6 6 C 1.50697 * 109.47230 * 165.80041 * 4 2 1 7 7 O 1.21292 * 119.99815 * 23.02968 * 6 4 2 8 8 N 1.34778 * 119.99991 * 203.04322 * 6 4 2 9 9 C 1.37090 * 119.99771 * 184.97782 * 8 6 4 10 10 H 1.07998 * 120.00591 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99671 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00364 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99988 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47265 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47207 * 120.00141 * 13 11 9 16 16 H 1.48495 * 109.47340 * 240.00330 * 13 11 9 17 17 C 1.53001 * 109.47217 * 285.79869 * 4 2 1 18 18 C 1.53000 * 117.49753 * 105.20195 * 17 4 2 19 19 C 1.53001 * 117.49786 * 173.85938 * 17 4 2 20 20 H 1.09001 * 109.46667 * 296.05179 * 1 2 3 21 21 H 1.09000 * 109.47034 * 56.04494 * 1 2 3 22 22 H 1.08994 * 109.46838 * 176.04984 * 1 2 3 23 23 H 1.08999 * 109.47158 * 180.44020 * 3 2 1 24 24 H 1.09004 * 109.46666 * 300.44071 * 3 2 1 25 25 H 1.08998 * 109.47214 * 60.43474 * 3 2 1 26 26 H 0.97006 * 119.99749 * 4.96989 * 8 6 4 27 27 H 0.96997 * 120.00231 * 179.97438 * 12 11 9 28 28 H 1.08998 * 115.55130 * 319.53258 * 17 4 2 29 29 H 1.08999 * 117.50393 * 215.00063 * 18 17 4 30 30 H 1.09006 * 117.50103 * 0.02562 * 18 17 4 31 31 H 1.09003 * 117.50123 * 359.97438 * 19 17 4 32 32 H 1.09005 * 117.49662 * 144.99524 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.4568 -1.7099 1.2206 6 6 3.4614 -1.0412 0.9226 7 8 4.1105 -0.3292 0.1857 8 7 4.0512 -2.0788 1.5489 9 6 5.4040 -2.2690 1.4347 10 1 5.9972 -1.5879 0.8426 11 6 6.0121 -3.3384 2.0808 12 7 5.2904 -4.1676 2.8008 13 14 7.8554 -3.5982 1.9247 14 1 8.4341 -2.5349 1.0645 15 1 8.4794 -3.5393 3.2710 16 1 8.1182 -4.9264 1.3149 17 6 1.8117 0.0410 2.4245 18 6 0.7007 -0.3976 3.3807 19 6 2.1666 -0.6449 3.7453 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0851 1.3424 -0.0079 24 1 1.6395 1.8972 -0.8861 25 1 1.6523 1.8924 0.8938 26 1 3.5184 -2.6907 2.0805 27 1 5.7149 -4.9143 3.2515 28 1 2.0123 1.1092 2.3424 29 1 0.1704 0.3820 3.9277 30 1 0.1010 -1.2613 3.0932 31 1 2.5308 -1.6712 3.6975 32 1 2.6009 -0.0280 4.5320 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308314787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = 0.103072 kcal Electronic energy + Delta-G solvation = -14661.689958 eV Core-core repulsion = 12237.548407 eV Total energy + Delta-G solvation = -2424.141551 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35438 -36.78468 -35.27021 -33.75879 -31.16626 -28.10003 -27.14219 -24.69960 -22.50221 -22.06802 -20.67135 -18.85861 -17.63660 -16.37767 -15.55622 -15.00510 -14.62554 -14.16539 -13.70752 -13.48834 -13.37380 -12.77642 -12.13983 -11.84895 -11.54702 -11.35060 -11.28256 -11.16184 -11.08144 -10.91812 -10.30579 -10.18821 -10.02655 -10.01363 -9.45646 -8.29369 -7.91578 -7.67034 -6.38019 -3.78020 3.18345 3.29108 3.36298 3.79646 4.09131 4.19898 4.41307 4.97578 5.08677 5.26040 5.36447 5.40895 5.46062 5.57204 5.70593 5.83006 5.87055 5.98398 6.06564 6.13680 6.20341 6.34544 6.37928 6.56246 6.71465 7.40253 7.52749 7.59499 8.11279 8.66623 9.22521 9.59190 10.11214 10.79864 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040442 B = 0.009078 C = 0.008066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.176033 B = 3083.680119 C = 3470.524956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.518 5.518 3 C 0.013 3.987 4 C 0.106 3.894 5 H 0.086 0.914 6 C 0.460 3.540 7 O -0.581 6.581 8 N -0.560 5.560 9 C -0.295 4.295 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.928 3.072 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.180 4.180 18 C -0.181 4.181 19 C -0.164 4.164 20 H 0.026 0.974 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.054 0.946 25 H 0.018 0.982 26 H 0.391 0.609 27 H 0.270 0.730 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 5.332 1.272 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.240 5.240 3 C -0.135 4.135 4 C -0.007 4.007 5 H 0.104 0.896 6 C 0.245 3.755 7 O -0.465 6.465 8 N -0.196 5.196 9 C -0.425 4.425 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.755 3.245 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.200 4.200 18 C -0.218 4.218 19 C -0.201 4.201 20 H 0.044 0.956 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.123 0.877 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.224 0.776 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.208 5.415 0.432 9.843 hybrid contribution 0.213 -0.195 1.115 1.152 sum -7.995 5.219 1.547 9.673 Atomic orbital electron populations 1.22410 0.88304 1.01684 1.00088 1.61911 1.06417 1.14811 1.40888 1.22731 1.04522 0.87635 0.98606 1.21149 0.96009 0.96442 0.87086 0.89611 1.19529 0.87706 0.83875 0.84383 1.90408 1.65257 1.50447 1.40391 1.41863 1.08676 1.24702 1.44377 1.19745 0.82937 1.10919 1.28909 0.87922 1.25233 1.00370 0.95832 0.96518 1.69614 1.36329 1.16034 1.32406 0.85824 0.82387 0.78306 0.77971 1.19261 1.20842 1.20795 1.22900 1.04416 1.00751 0.91923 1.23019 0.91939 1.03077 1.03806 1.22936 0.96785 1.02756 0.97665 0.95580 0.91845 0.91887 0.87678 0.92684 0.96355 0.77581 0.91992 0.87273 0.89337 0.88964 0.87786 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.40 60.07 0.56 0.89 16 2 N -0.52 -9.30 4.82 -244.57 -1.18 -10.48 16 3 C 0.01 0.22 8.65 60.07 0.52 0.74 16 4 C 0.11 2.00 2.28 -68.86 -0.16 1.85 16 5 H 0.09 1.55 7.80 -51.93 -0.41 1.14 16 6 C 0.46 11.12 6.75 -10.99 -0.07 11.05 16 7 O -0.58 -15.87 13.57 5.55 0.08 -15.79 16 8 N -0.56 -14.31 5.06 -10.97 -0.06 -14.37 16 9 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 10 H 0.10 3.02 7.17 -52.49 -0.38 2.65 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 13 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.18 -2.98 4.02 -90.62 -0.36 -3.34 16 18 C -0.18 -2.47 9.86 -26.69 -0.26 -2.73 16 19 C -0.16 -2.65 9.97 -26.69 -0.27 -2.91 16 20 H 0.03 0.33 7.29 -51.93 -0.38 -0.04 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 23 H 0.10 2.17 5.50 -51.93 -0.29 1.89 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.02 0.28 6.06 -51.93 -0.31 -0.03 16 26 H 0.39 9.60 7.02 -40.82 -0.29 9.31 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.11 1.83 5.86 -51.93 -0.30 1.52 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.10 1.87 7.09 -51.93 -0.37 1.50 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 264.33 15.07 3.98 3.98 Total: -1.00 -30.08 264.33 -6.14 -36.22 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.38 Total: 10.46 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.28 Total: -2.39 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.51 Total: -48.64 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.08 Total: -15.79 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.08 -6.14 -36.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308314787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.323 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds