Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99913 * 2 1 4 4 C 1.46903 * 111.00123 * 123.94839 * 2 1 3 5 5 H 1.09004 * 109.46936 * 45.79944 * 4 2 1 6 6 C 1.50697 * 109.47230 * 165.80041 * 4 2 1 7 7 O 1.21292 * 119.99815 * 23.02968 * 6 4 2 8 8 N 1.34778 * 119.99991 * 203.04322 * 6 4 2 9 9 C 1.37090 * 119.99771 * 184.97782 * 8 6 4 10 10 H 1.07998 * 120.00591 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99671 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00364 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99988 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47265 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47207 * 120.00141 * 13 11 9 16 16 H 1.48495 * 109.47340 * 240.00330 * 13 11 9 17 17 C 1.53001 * 109.47217 * 285.79869 * 4 2 1 18 18 C 1.53000 * 117.49753 * 105.20195 * 17 4 2 19 19 C 1.53001 * 117.49786 * 173.85938 * 17 4 2 20 20 H 1.09001 * 109.46667 * 296.05179 * 1 2 3 21 21 H 1.09000 * 109.47034 * 56.04494 * 1 2 3 22 22 H 1.08994 * 109.46838 * 176.04984 * 1 2 3 23 23 H 1.08999 * 109.47158 * 180.44020 * 3 2 1 24 24 H 1.09004 * 109.46666 * 300.44071 * 3 2 1 25 25 H 1.08998 * 109.47214 * 60.43474 * 3 2 1 26 26 H 0.97006 * 119.99749 * 4.96989 * 8 6 4 27 27 H 0.96997 * 120.00231 * 179.97438 * 12 11 9 28 28 H 1.08998 * 115.55130 * 319.53258 * 17 4 2 29 29 H 1.08999 * 117.50393 * 215.00063 * 18 17 4 30 30 H 1.09006 * 117.50103 * 0.02562 * 18 17 4 31 31 H 1.09003 * 117.50123 * 359.97438 * 19 17 4 32 32 H 1.09005 * 117.49662 * 144.99524 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.4568 -1.7099 1.2206 6 6 3.4614 -1.0412 0.9226 7 8 4.1105 -0.3292 0.1857 8 7 4.0512 -2.0788 1.5489 9 6 5.4040 -2.2690 1.4347 10 1 5.9972 -1.5879 0.8426 11 6 6.0121 -3.3384 2.0808 12 7 5.2904 -4.1676 2.8008 13 14 7.8554 -3.5982 1.9247 14 1 8.4341 -2.5349 1.0645 15 1 8.4794 -3.5393 3.2710 16 1 8.1182 -4.9264 1.3149 17 6 1.8117 0.0410 2.4245 18 6 0.7007 -0.3976 3.3807 19 6 2.1666 -0.6449 3.7453 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0851 1.3424 -0.0079 24 1 1.6395 1.8972 -0.8861 25 1 1.6523 1.8924 0.8938 26 1 3.5184 -2.6907 2.0805 27 1 5.7149 -4.9143 3.2515 28 1 2.0123 1.1092 2.3424 29 1 0.1704 0.3820 3.9277 30 1 0.1010 -1.2613 3.0932 31 1 2.5308 -1.6712 3.6975 32 1 2.6009 -0.0280 4.5320 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308314787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = -21.578706 kcal Electronic energy + Delta-G solvation = -14662.630151 eV Core-core repulsion = 12237.548407 eV Total energy + Delta-G solvation = -2425.081743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96141 -38.46963 -36.63952 -35.71420 -33.21813 -29.63046 -28.39686 -26.67165 -23.77870 -23.26881 -22.27124 -20.64927 -19.58138 -18.00526 -16.99252 -16.60427 -16.36665 -15.79506 -15.33475 -15.11163 -14.92932 -14.16788 -13.76659 -13.46713 -13.07697 -12.95086 -12.59019 -12.50887 -12.44502 -12.41538 -12.31778 -12.09658 -11.50459 -11.33455 -11.22710 -10.05683 -9.97424 -9.08790 -8.44478 -5.92542 1.36398 1.41600 1.55652 2.03005 2.29308 2.78393 2.91602 3.23028 3.56634 3.75309 4.00089 4.02907 4.11801 4.40538 4.44707 4.51419 4.66822 4.76917 4.79680 4.87418 4.98927 5.05540 5.19199 5.24261 5.27248 5.43531 5.92851 6.10403 6.29285 6.63124 7.15457 7.58559 8.14646 8.72984 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040442 B = 0.009078 C = 0.008066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.176033 B = 3083.680119 C = 3470.524956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.118 3.882 5 H 0.096 0.904 6 C 0.453 3.547 7 O -0.618 6.618 8 N -0.567 5.567 9 C -0.330 4.330 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.272 1.272 17 C -0.194 4.194 18 C -0.139 4.139 19 C -0.182 4.182 20 H 0.041 0.959 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.393 0.607 27 H 0.277 0.723 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 5.425 1.929 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.129 4.129 4 C 0.005 3.995 5 H 0.114 0.886 6 C 0.241 3.759 7 O -0.505 6.505 8 N -0.204 5.204 9 C -0.459 4.459 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.199 1.199 15 H -0.195 1.195 16 H -0.197 1.197 17 C -0.214 4.214 18 C -0.176 4.176 19 C -0.220 4.220 20 H 0.060 0.940 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.228 0.772 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.722 5.500 1.101 11.224 hybrid contribution 0.639 -0.200 0.883 1.108 sum -9.083 5.300 1.984 10.702 Atomic orbital electron populations 1.22481 0.85292 1.02812 1.01623 1.61857 1.09117 1.14940 1.40639 1.22579 1.01951 0.87976 1.00408 1.20940 0.91902 0.97682 0.88950 0.88625 1.20615 0.90063 0.82479 0.82784 1.90393 1.67028 1.51373 1.41706 1.41916 1.08080 1.25435 1.44954 1.19677 0.84259 1.11720 1.30279 0.90490 1.25993 1.04525 0.95008 0.95649 1.69673 1.37911 1.16162 1.32303 0.84903 0.77170 0.78171 0.78282 1.19912 1.19529 1.19691 1.22770 1.07581 1.00128 0.90931 1.23130 0.90361 1.03654 1.00464 1.22912 0.99753 1.01547 0.97757 0.94025 0.90202 0.91042 0.91810 0.90748 0.94587 0.77246 0.91359 0.87502 0.86498 0.87566 0.90081 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.40 127.69 1.20 1.82 16 2 N -0.54 -18.75 4.82 -927.70 -4.47 -23.22 16 3 C 0.02 0.62 8.65 127.69 1.10 1.73 16 4 C 0.12 4.38 2.28 44.17 0.10 4.49 16 5 H 0.10 3.33 7.80 -2.38 -0.02 3.31 16 6 C 0.45 22.54 6.75 87.66 0.59 23.13 16 7 O -0.62 -35.23 13.57 -3.07 -0.04 -35.28 16 8 N -0.57 -29.91 5.06 -306.99 -1.55 -31.46 16 9 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 10 H 0.08 4.77 7.17 -2.91 -0.02 4.74 16 11 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 12 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 13 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 C -0.19 -6.13 4.02 -10.79 -0.04 -6.17 16 18 C -0.14 -3.30 9.86 30.62 0.30 -3.00 16 19 C -0.18 -5.68 9.97 30.62 0.31 -5.38 16 20 H 0.04 0.90 7.29 -2.39 -0.02 0.88 16 21 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 23 H 0.06 2.70 5.50 -2.39 -0.01 2.69 16 24 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.04 1.06 6.06 -2.39 -0.01 1.05 16 26 H 0.39 19.86 7.02 -92.70 -0.65 19.21 16 27 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.11 3.42 5.86 -2.39 -0.01 3.41 16 29 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.11 2.27 8.09 -2.38 -0.02 2.25 16 31 H 0.08 2.92 7.09 -2.39 -0.02 2.91 16 32 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 Total: -1.00 -66.16 264.33 1.56 -64.60 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.47 Total: 31.29 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.84 Total: -1.83 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -5.74 Total: -104.42 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.04 Total: -35.28 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.16 1.56 -64.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308314787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.026 kcal (2) G-P(sol) polarization free energy of solvation -66.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds