Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37105 * 119.99679 * 2 1 4 4 H 1.08004 * 119.99329 * 202.41050 * 3 2 1 5 5 C 1.38949 * 120.00164 * 22.40946 * 3 2 1 6 6 N 1.31413 * 119.99883 * 11.59050 * 5 3 2 7 7 Si 1.86802 * 119.99848 * 191.58966 * 5 3 2 8 8 H 1.48502 * 109.47145 * 90.00232 * 7 5 3 9 9 H 1.48499 * 109.47073 * 209.99785 * 7 5 3 10 10 H 1.48495 * 109.46984 * 330.00356 * 7 5 3 11 11 C 1.34773 * 119.99994 * 180.02562 * 2 1 3 12 12 O 1.21297 * 120.00013 * 179.97438 * 11 2 1 13 13 C 1.50695 * 120.00077 * 0.02562 * 11 2 1 14 14 N 1.46897 * 109.47139 * 179.97438 * 13 11 2 15 15 C 1.46907 * 111.00114 * 66.04681 * 14 13 11 16 16 C 1.46901 * 111.00079 * 189.99551 * 14 13 11 17 17 C 1.53003 * 117.50090 * 243.75074 * 16 14 13 18 18 C 1.52999 * 117.49889 * 175.08755 * 16 14 13 19 19 H 1.09002 * 109.47234 * 272.16394 * 1 2 3 20 20 H 1.09007 * 109.47728 * 32.15789 * 1 2 3 21 21 H 1.09006 * 109.47494 * 152.16020 * 1 2 3 22 22 H 0.96999 * 119.99558 * 179.97438 * 6 5 3 23 23 H 1.09006 * 109.47562 * 59.99877 * 13 11 2 24 24 H 1.09004 * 109.46916 * 299.99824 * 13 11 2 25 25 H 1.08997 * 109.47223 * 183.95239 * 15 14 13 26 26 H 1.09005 * 109.46415 * 303.95704 * 15 14 13 27 27 H 1.08997 * 109.46860 * 63.94788 * 15 14 13 28 28 H 1.09000 * 115.55122 * 29.42318 * 16 14 13 29 29 H 1.09002 * 117.49778 * 359.97438 * 17 16 14 30 30 H 1.08998 * 117.49666 * 145.02410 * 17 16 14 31 31 H 1.09001 * 117.49917 * 214.98310 * 18 16 14 32 32 H 1.08999 * 117.50202 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1693 1.2227 -0.3566 5 6 1.5344 2.3453 0.4587 6 7 0.3895 2.2707 1.0996 7 14 2.3336 4.0079 0.1645 8 1 1.8581 4.5639 -1.1278 9 1 1.9687 4.9344 1.2662 10 1 3.8091 3.8470 0.1212 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4722 -0.0017 14 7 2.3400 -3.5888 -0.0027 15 6 3.1053 -3.6282 1.2506 16 6 1.6555 -4.8664 -0.2419 17 6 1.6909 -5.9075 0.8788 18 6 2.5247 -6.1170 -0.3878 19 1 -0.3634 0.0388 1.0269 20 1 -0.3635 0.8700 -0.5470 21 1 -0.3634 -0.9087 -0.4799 22 1 -0.0404 3.0790 1.4201 23 1 0.7590 -2.5295 -0.8920 24 1 0.7584 -2.5306 0.8881 25 1 3.8524 -4.4200 1.1954 26 1 3.6019 -2.6699 1.4033 27 1 2.4294 -3.8238 2.0831 28 1 0.7508 -4.8090 -0.8470 29 1 2.2225 -5.6446 1.7934 30 1 0.8096 -6.5352 1.0105 31 1 2.1916 -6.8825 -1.0887 32 1 3.6045 -5.9918 -0.3068 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308453898.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = 17.583022 kcal Electronic energy + Delta-G solvation = -14412.195630 eV Core-core repulsion = 11988.812067 eV Total energy + Delta-G solvation = -2423.383563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.06979 -37.69994 -34.70769 -33.16410 -31.56852 -27.84910 -26.24644 -25.14320 -23.65405 -22.25796 -19.96520 -18.74840 -16.84573 -16.59294 -15.63329 -15.10264 -14.83435 -14.14784 -13.87462 -13.38054 -13.21114 -12.31984 -12.16422 -11.83738 -11.49082 -11.40806 -11.18619 -11.08845 -10.84725 -10.78712 -10.62635 -10.33235 -10.26414 -10.17274 -8.98948 -8.31211 -7.69422 -7.62349 -6.27353 -3.83828 3.19006 3.27264 3.33063 3.81895 3.94819 4.10430 4.30177 4.96781 5.04887 5.08990 5.14349 5.19475 5.54886 5.70313 5.77409 5.84962 5.95027 5.98901 6.03677 6.09774 6.21860 6.36115 6.60984 6.89756 7.24169 7.34396 7.46190 7.60372 8.19028 8.54490 9.24499 9.47307 10.04910 10.76439 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.069284 B = 0.007042 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.035333 B = 3975.027526 C = 4177.243055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.302 4.302 4 H 0.099 0.901 5 C 0.028 3.972 6 N -0.887 5.887 7 Si 0.927 3.073 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.451 3.549 12 O -0.573 6.573 13 C 0.048 3.952 14 N -0.489 5.489 15 C 0.019 3.981 16 C 0.024 3.976 17 C -0.224 4.224 18 C -0.172 4.172 19 H 0.056 0.944 20 H 0.069 0.931 21 H 0.024 0.976 22 H 0.266 0.734 23 H 0.087 0.913 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.020 0.980 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -10.345 -0.743 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.171 5.171 3 C -0.431 4.431 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.527 5.527 7 Si 0.754 3.246 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.238 3.762 12 O -0.456 6.456 13 C -0.083 4.083 14 N -0.210 5.210 15 C -0.128 4.128 16 C -0.086 4.086 17 C -0.263 4.263 18 C -0.210 4.210 19 H 0.075 0.925 20 H 0.087 0.913 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.039 0.961 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.601 -10.069 -1.044 10.249 hybrid contribution -0.543 0.689 0.613 1.070 sum -2.143 -9.381 -0.432 9.632 Atomic orbital electron populations 1.21494 0.81275 0.98694 1.01601 1.43586 1.05448 1.04719 1.63354 1.19667 0.99472 0.83795 1.40117 0.88370 1.25333 0.96568 1.00032 0.95489 1.70001 1.17492 1.29156 1.36003 0.85911 0.79657 0.81258 0.77793 1.20419 1.21016 1.19385 1.19871 0.88183 0.84409 0.83753 1.90480 1.13750 1.86697 1.54714 1.21941 0.93912 0.90947 1.01462 1.61472 1.23944 1.00132 1.35491 1.22626 0.97242 1.04508 0.88457 1.22728 0.98624 0.86079 1.01186 1.23560 1.03198 1.05065 0.94489 1.23020 0.98785 0.99449 0.99761 0.92504 0.91266 0.95731 0.92360 0.89472 0.93138 0.92202 0.88548 0.96109 0.86744 0.88230 0.89201 0.88829 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.55 8.52 59.85 0.51 3.06 16 2 N -0.45 -11.74 3.02 -122.19 -0.37 -12.11 16 3 C -0.30 -8.56 9.29 -14.93 -0.14 -8.70 16 4 H 0.10 2.91 7.41 -52.48 -0.39 2.52 16 5 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 6 N -0.89 -23.85 10.62 55.50 0.59 -23.26 16 7 Si 0.93 21.02 29.57 -169.99 -5.03 15.99 16 8 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 C 0.45 11.18 7.32 -10.99 -0.08 11.10 16 12 O -0.57 -16.05 14.03 5.54 0.08 -15.97 16 13 C 0.05 0.93 3.94 -4.98 -0.02 0.91 16 14 N -0.49 -8.91 4.71 -236.32 -1.11 -10.02 16 15 C 0.02 0.34 7.88 60.07 0.47 0.81 16 16 C 0.02 0.34 6.10 -67.71 -0.41 -0.07 16 17 C -0.22 -2.73 9.50 -26.69 -0.25 -2.98 16 18 C -0.17 -2.12 10.01 -26.69 -0.27 -2.38 16 19 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 20 H 0.07 1.64 7.06 -51.93 -0.37 1.27 16 21 H 0.02 0.45 6.36 -51.93 -0.33 0.12 16 22 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 23 H 0.09 1.51 7.22 -51.93 -0.38 1.14 16 24 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 25 H 0.06 0.94 6.91 -51.93 -0.36 0.58 16 26 H 0.10 2.05 5.82 -51.93 -0.30 1.75 16 27 H 0.02 0.33 6.96 -51.93 -0.36 -0.03 16 28 H 0.11 1.47 7.93 -51.93 -0.41 1.06 16 29 H 0.10 1.26 5.87 -51.93 -0.30 0.95 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.24 7.57 -51.93 -0.39 0.85 16 LS Contribution 260.27 15.07 3.92 3.92 Total: -1.00 -30.77 260.27 -6.58 -37.35 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.38 Total: 1.69 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -0.28 Total: 2.42 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.89 Total: -45.39 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.08 Total: -15.97 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.77 -6.58 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308453898.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.932 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds