Wall clock time and date at job start Mon Mar 30 2020 02:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47022 * 2 1 4 4 C 1.46505 * 120.00223 * 269.99750 * 3 2 1 5 5 C 1.34777 * 119.99886 * 90.00000 * 3 2 1 6 6 O 1.21578 * 120.00369 * 355.42318 * 5 3 2 7 7 N 1.34777 * 119.99974 * 175.41786 * 5 3 2 8 8 C 1.37193 * 120.00399 * 359.38886 * 7 5 3 9 9 H 1.08002 * 119.99881 * 297.91110 * 8 7 5 10 10 C 1.38878 * 120.00288 * 117.90090 * 8 7 5 11 11 N 1.31473 * 120.00010 * 2.68478 * 10 8 7 12 12 Si 1.86797 * 120.00093 * 182.68620 * 10 8 7 13 13 H 1.48497 * 109.47057 * 269.99940 * 12 10 8 14 14 H 1.48508 * 109.47127 * 30.00168 * 12 10 8 15 15 H 1.48502 * 109.47441 * 149.99918 * 12 10 8 16 16 C 1.46504 * 120.00041 * 179.38460 * 7 5 3 17 17 C 1.52997 * 117.49828 * 181.62686 * 16 7 5 18 18 C 1.53005 * 117.49514 * 112.97103 * 16 7 5 19 19 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.46795 * 300.00093 * 1 2 3 21 21 H 1.09003 * 109.46696 * 60.00038 * 1 2 3 22 22 H 1.08997 * 109.47239 * 239.99807 * 2 1 3 23 23 H 1.09007 * 109.47164 * 120.00105 * 2 1 3 24 24 H 1.08997 * 109.46990 * 262.69635 * 4 3 2 25 25 H 1.08998 * 109.46846 * 22.69996 * 4 3 2 26 26 H 1.09003 * 109.46879 * 142.69402 * 4 3 2 27 27 H 0.97006 * 119.99697 * 354.48183 * 11 10 8 28 28 H 1.08999 * 115.54835 * 327.29975 * 16 7 5 29 29 H 1.09001 * 117.50202 * 0.02562 * 17 16 7 30 30 H 1.09003 * 117.49824 * 145.02400 * 17 16 7 31 31 H 1.09005 * 117.49292 * 214.97957 * 18 16 7 32 32 H 1.08992 * 117.50135 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2429 2.0165 1.1672 6 8 1.9621 1.4741 2.2185 7 7 2.7790 3.2531 1.1691 8 6 3.1077 3.8601 -0.0165 9 1 3.8539 3.4187 -0.6605 10 6 2.4808 5.0421 -0.3887 11 7 1.6109 5.6075 0.4190 12 14 2.8734 5.8288 -2.0368 13 1 4.0090 6.7722 -1.8769 14 1 3.2408 4.7730 -3.0143 15 1 1.6825 6.5667 -2.5294 16 6 3.0107 3.9491 2.4372 17 6 3.5863 5.3651 2.3710 18 6 4.4623 4.2041 2.8482 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 3.3218 2.0100 -1.5180 25 1 1.6756 1.6012 -2.0574 26 1 1.9718 3.1181 -1.1746 27 1 1.3470 5.1593 1.2379 28 1 2.2937 3.7338 3.2295 29 1 3.7922 5.7791 1.3839 30 1 3.2483 6.0813 3.1200 31 1 4.7001 4.1569 3.9109 32 1 5.2448 3.8537 2.1753 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335585078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:02 Heat of formation + Delta-G solvation = 27.675475 kcal Electronic energy + Delta-G solvation = -15212.395647 eV Core-core repulsion = 12789.449726 eV Total energy + Delta-G solvation = -2422.945922 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.42500 -36.67497 -34.80527 -33.34945 -31.25406 -29.65558 -26.29005 -24.01431 -23.02383 -21.38922 -20.37754 -19.26862 -17.56243 -15.99078 -15.39754 -14.92361 -14.25888 -13.99898 -13.80056 -13.39834 -12.72943 -12.49955 -12.12757 -11.71571 -11.60460 -11.53566 -11.24129 -10.70330 -10.49037 -10.38996 -10.30870 -9.96946 -9.60763 -9.36627 -8.97608 -8.36722 -7.77647 -7.30818 -6.36151 -4.15315 3.24974 3.27045 3.43145 3.81843 4.23566 4.30342 4.93485 5.09122 5.23704 5.56668 5.78379 5.87884 5.93210 6.06623 6.09429 6.11260 6.23624 6.41097 6.46921 6.58497 6.69508 6.72944 6.96203 7.15626 7.28280 7.68362 7.86107 8.04501 8.30011 8.51773 9.12597 9.67461 10.05318 10.70674 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.015635 C = 0.010991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.306915 B = 1790.446326 C = 2547.031490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 N -0.627 5.627 4 C 0.079 3.921 5 C 0.697 3.303 6 O -0.638 6.638 7 N -0.463 5.463 8 C -0.414 4.414 9 H 0.073 0.927 10 C 0.008 3.992 11 N -0.872 5.872 12 Si 1.070 2.930 13 H -0.283 1.283 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.103 3.897 17 C -0.158 4.158 18 C -0.210 4.210 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.024 0.976 26 H 0.129 0.871 27 H 0.282 0.718 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 -3.458 -3.479 5.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.364 5.364 4 C -0.063 4.063 5 C 0.402 3.598 6 O -0.522 6.522 7 N -0.187 5.187 8 C -0.543 4.543 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.504 5.504 12 Si 0.896 3.104 13 H -0.209 1.209 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.003 4.003 17 C -0.196 4.196 18 C -0.250 4.250 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.147 0.853 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.890 -2.394 -3.879 4.644 hybrid contribution 0.415 -1.316 0.888 1.641 sum 1.305 -3.710 -2.991 4.941 Atomic orbital electron populations 1.22146 0.97158 1.00769 1.02243 1.21049 0.93580 0.82976 1.01374 1.46612 1.70707 1.13136 1.05898 1.22845 0.98614 1.02062 0.82797 1.16197 0.78320 0.82445 0.82880 1.90721 1.61854 1.68672 1.30945 1.41980 1.59232 1.13167 1.04319 1.20020 1.24642 1.12274 0.97332 0.90926 1.26554 0.94271 0.95205 1.04183 1.70628 1.28678 1.38499 1.12562 0.83469 0.76736 0.76264 0.73930 1.20919 1.20482 1.20517 1.21302 0.93970 0.96018 0.88966 1.23177 1.02604 0.90599 1.03180 1.23277 0.96284 1.05787 0.99605 0.92733 0.92295 0.93036 0.91989 0.91027 0.94619 0.95729 0.85344 0.90539 0.88115 0.86665 0.90340 0.90409 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.13 2.47 6.06 -4.04 -0.02 2.45 16 3 N -0.63 -14.00 2.87 -187.35 -0.54 -14.53 16 4 C 0.08 1.62 8.81 59.85 0.53 2.15 16 5 C 0.70 18.11 8.16 -86.92 -0.71 17.40 16 6 O -0.64 -17.83 15.77 5.30 0.08 -17.75 16 7 N -0.46 -11.90 2.44 -113.95 -0.28 -12.17 16 8 C -0.41 -10.28 4.73 -14.92 -0.07 -10.35 16 9 H 0.07 1.80 5.92 -52.49 -0.31 1.49 16 10 C 0.01 0.19 3.10 -17.47 -0.05 0.14 16 11 N -0.87 -23.36 12.29 55.49 0.68 -22.68 16 12 Si 1.07 21.76 29.44 -169.99 -5.00 16.76 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 16 C 0.10 2.50 4.75 -67.93 -0.32 2.18 16 17 C -0.16 -3.50 8.23 -26.70 -0.22 -3.72 16 18 C -0.21 -4.45 10.38 -26.69 -0.28 -4.73 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 0.95 8.07 -51.93 -0.42 0.54 16 23 H 0.07 1.38 7.49 -51.93 -0.39 0.99 16 24 H 0.04 0.72 6.83 -51.93 -0.35 0.36 16 25 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 26 H 0.13 2.97 3.69 -53.66 -0.20 2.77 16 27 H 0.28 7.92 6.28 -40.82 -0.26 7.66 16 28 H 0.10 2.50 7.84 -51.93 -0.41 2.09 16 29 H 0.12 2.80 5.69 -51.93 -0.30 2.51 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -29.00 257.27 -6.33 -35.33 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.38 Total: 8.02 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.77 Total: 3.15 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.13 Total: -49.39 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.08 Total: -17.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.00 Total: 16.76 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.00 -6.33 -35.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335585078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.005 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds