Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47022 * 2 1 4 4 C 1.46505 * 120.00223 * 269.99750 * 3 2 1 5 5 C 1.34777 * 119.99886 * 90.00000 * 3 2 1 6 6 O 1.21578 * 120.00369 * 355.42318 * 5 3 2 7 7 N 1.34777 * 119.99974 * 175.41786 * 5 3 2 8 8 C 1.37193 * 120.00399 * 359.38886 * 7 5 3 9 9 H 1.08002 * 119.99881 * 297.91110 * 8 7 5 10 10 C 1.38878 * 120.00288 * 117.90090 * 8 7 5 11 11 N 1.31473 * 120.00010 * 2.68478 * 10 8 7 12 12 Si 1.86797 * 120.00093 * 182.68620 * 10 8 7 13 13 H 1.48497 * 109.47057 * 269.99940 * 12 10 8 14 14 H 1.48508 * 109.47127 * 30.00168 * 12 10 8 15 15 H 1.48502 * 109.47441 * 149.99918 * 12 10 8 16 16 C 1.46504 * 120.00041 * 179.38460 * 7 5 3 17 17 C 1.52997 * 117.49828 * 181.62686 * 16 7 5 18 18 C 1.53005 * 117.49514 * 112.97103 * 16 7 5 19 19 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.46795 * 300.00093 * 1 2 3 21 21 H 1.09003 * 109.46696 * 60.00038 * 1 2 3 22 22 H 1.08997 * 109.47239 * 239.99807 * 2 1 3 23 23 H 1.09007 * 109.47164 * 120.00105 * 2 1 3 24 24 H 1.08997 * 109.46990 * 262.69635 * 4 3 2 25 25 H 1.08998 * 109.46846 * 22.69996 * 4 3 2 26 26 H 1.09003 * 109.46879 * 142.69402 * 4 3 2 27 27 H 0.97006 * 119.99697 * 354.48183 * 11 10 8 28 28 H 1.08999 * 115.54835 * 327.29975 * 16 7 5 29 29 H 1.09001 * 117.50202 * 0.02562 * 17 16 7 30 30 H 1.09003 * 117.49824 * 145.02400 * 17 16 7 31 31 H 1.09005 * 117.49292 * 214.97957 * 18 16 7 32 32 H 1.08992 * 117.50135 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2429 2.0165 1.1672 6 8 1.9621 1.4741 2.2185 7 7 2.7790 3.2531 1.1691 8 6 3.1077 3.8601 -0.0165 9 1 3.8539 3.4187 -0.6605 10 6 2.4808 5.0421 -0.3887 11 7 1.6109 5.6075 0.4190 12 14 2.8734 5.8288 -2.0368 13 1 4.0090 6.7722 -1.8769 14 1 3.2408 4.7730 -3.0143 15 1 1.6825 6.5667 -2.5294 16 6 3.0107 3.9491 2.4372 17 6 3.5863 5.3651 2.3710 18 6 4.4623 4.2041 2.8482 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 3.3218 2.0100 -1.5180 25 1 1.6756 1.6012 -2.0574 26 1 1.9718 3.1181 -1.1746 27 1 1.3470 5.1593 1.2379 28 1 2.2937 3.7338 3.2295 29 1 3.7922 5.7791 1.3839 30 1 3.2483 6.0813 3.1200 31 1 4.7001 4.1569 3.9109 32 1 5.2448 3.8537 2.1753 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335585078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = 10.514622 kcal Electronic energy + Delta-G solvation = -15213.139798 eV Core-core repulsion = 12789.449726 eV Total energy + Delta-G solvation = -2423.690072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30676 -38.49646 -36.67968 -35.13243 -33.13187 -31.26137 -28.08815 -25.84734 -24.63420 -23.14297 -22.16007 -21.13837 -19.39990 -17.85903 -17.24075 -16.77713 -15.98259 -15.70194 -15.47089 -15.04080 -14.40131 -14.29090 -13.91690 -13.50209 -13.25532 -13.07975 -12.76496 -12.37447 -12.10395 -11.90611 -11.84298 -11.77601 -11.42854 -11.24303 -10.94795 -10.24870 -9.65342 -9.17828 -8.29020 -6.11800 1.62846 1.66695 1.85585 2.09751 2.36224 2.55967 3.07347 3.26291 3.47186 4.08213 4.13961 4.24954 4.33843 4.36702 4.51013 4.62581 4.77422 4.84022 4.86131 4.98170 5.01451 5.17888 5.28503 5.44679 5.47355 5.89284 6.01768 6.11427 6.41584 6.56606 7.21751 7.74761 8.10786 8.72103 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.015635 C = 0.010991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.306915 B = 1790.446326 C = 2547.031490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 N -0.629 5.629 4 C 0.080 3.920 5 C 0.678 3.322 6 O -0.671 6.671 7 N -0.474 5.474 8 C -0.409 4.409 9 H 0.075 0.925 10 C -0.022 4.022 11 N -0.897 5.897 12 Si 1.111 2.889 13 H -0.276 1.276 14 H -0.250 1.250 15 H -0.288 1.288 16 C 0.070 3.930 17 C -0.146 4.146 18 C -0.184 4.184 19 H 0.090 0.910 20 H 0.022 0.978 21 H 0.058 0.942 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.263 0.737 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -3.980 -5.116 6.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 N -0.365 5.365 4 C -0.061 4.061 5 C 0.382 3.618 6 O -0.557 6.557 7 N -0.198 5.198 8 C -0.537 4.537 9 H 0.093 0.907 10 C -0.226 4.226 11 N -0.530 5.530 12 Si 0.932 3.068 13 H -0.201 1.201 14 H -0.174 1.174 15 H -0.213 1.213 16 C -0.036 4.036 17 C -0.183 4.183 18 C -0.223 4.223 19 H 0.109 0.891 20 H 0.041 0.959 21 H 0.077 0.923 22 H 0.120 0.880 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.639 -2.944 -5.535 6.480 hybrid contribution 0.173 -1.219 1.418 1.878 sum 1.812 -4.163 -4.117 6.129 Atomic orbital electron populations 1.22065 0.95901 1.02696 1.00736 1.21355 0.94611 0.81089 1.02533 1.46828 1.69947 1.14422 1.05270 1.22708 0.99524 1.01008 0.82891 1.16602 0.78658 0.82816 0.83690 1.90670 1.63251 1.69454 1.32372 1.42196 1.59256 1.13283 1.05036 1.20132 1.24318 1.12135 0.97139 0.90709 1.27770 0.93150 0.95595 1.06075 1.70765 1.30643 1.38969 1.12593 0.82978 0.76415 0.76387 0.71066 1.20137 1.17412 1.21342 1.21388 0.95774 0.97719 0.88713 1.23050 1.02403 0.90211 1.02678 1.23294 0.94122 1.03666 1.01188 0.89116 0.95891 0.92308 0.88035 0.92555 0.94134 0.92081 0.87863 0.92586 0.89799 0.88629 0.88732 0.87475 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 10.24 71.98 0.74 -4.19 16 2 C 0.13 4.43 6.06 86.38 0.52 4.96 16 3 N -0.63 -27.45 2.87 -864.92 -2.49 -29.94 16 4 C 0.08 3.13 8.81 127.77 1.13 4.26 16 5 C 0.68 35.66 8.16 179.05 1.46 37.12 16 6 O -0.67 -38.49 15.77 -3.96 -0.06 -38.55 16 7 N -0.47 -24.60 2.44 -632.69 -1.55 -26.14 16 8 C -0.41 -20.14 4.73 84.01 0.40 -19.75 16 9 H 0.08 3.61 5.92 -2.91 -0.02 3.59 16 10 C -0.02 -1.06 3.10 84.90 0.26 -0.80 16 11 N -0.90 -48.60 12.29 21.65 0.27 -48.33 16 12 Si 1.11 42.49 29.44 68.60 2.02 44.51 16 13 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 14 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 15 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 16 C 0.07 3.43 4.75 44.99 0.21 3.64 16 17 C -0.15 -6.43 8.23 30.62 0.25 -6.18 16 18 C -0.18 -7.58 10.38 30.62 0.32 -7.27 16 19 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 20 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.10 2.74 8.07 -2.39 -0.02 2.72 16 23 H 0.06 2.13 7.49 -2.38 -0.02 2.12 16 24 H 0.04 1.53 6.83 -2.39 -0.02 1.51 16 25 H 0.06 1.94 8.02 -2.39 -0.02 1.92 16 26 H 0.10 4.63 3.69 -4.01 -0.01 4.61 16 27 H 0.26 15.18 6.28 -92.70 -0.58 14.60 16 28 H 0.08 4.33 7.84 -2.39 -0.02 4.31 16 29 H 0.10 4.64 5.69 -2.39 -0.01 4.63 16 30 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.11 3.77 8.14 -2.38 -0.02 3.75 16 32 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -63.43 257.27 4.77 -58.67 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 1.29 Total: 28.00 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 5.29 Total: 11.79 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.76 Total: -104.41 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.06 Total: -38.55 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.02 Total: 44.51 kcal Total: -63.43 4.77 -58.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335585078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.180 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds