Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46647 * 2 1 4 4 C 1.50698 * 109.46910 * 119.99897 * 2 1 3 5 5 H 1.08001 * 119.99817 * 120.00689 * 4 2 1 6 6 C 1.37884 * 120.00238 * 299.99719 * 4 2 1 7 7 N 1.31517 * 119.99789 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46703 * 60.00673 * 8 6 4 10 10 H 1.48498 * 109.46973 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47388 * 300.00511 * 8 6 4 12 12 N 1.46496 * 109.47040 * 240.00126 * 2 1 3 13 13 N 1.40099 * 120.00045 * 90.00038 * 12 2 1 14 14 C 1.28009 * 119.99921 * 179.97438 * 13 12 2 15 15 C 1.50698 * 119.99883 * 180.02562 * 14 13 12 16 16 C 1.52994 * 113.08270 * 348.09312 * 15 14 13 17 17 C 1.54036 * 113.81709 * 120.00235 * 15 14 13 18 18 O 1.44179 * 85.66382 * 136.73615 * 17 15 14 19 19 C 1.44442 * 93.22864 * 335.92808 * 18 17 15 20 20 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47422 * 299.99799 * 1 2 3 22 22 H 1.08999 * 109.47210 * 60.00091 * 1 2 3 23 23 H 0.96999 * 120.00080 * 179.97438 * 7 6 4 24 24 H 0.96999 * 119.99705 * 269.99593 * 12 2 1 25 25 H 1.08002 * 120.00117 * 0.02562 * 14 13 12 26 26 H 1.09004 * 109.47396 * 191.90974 * 16 15 14 27 27 H 1.09003 * 109.47172 * 311.90193 * 16 15 14 28 28 H 1.08993 * 109.47425 * 71.90995 * 16 15 14 29 29 H 1.09002 * 113.86404 * 250.95052 * 17 15 14 30 30 H 1.09002 * 113.86879 * 22.52496 * 17 15 14 31 31 H 1.09008 * 113.74590 * 269.91647 * 19 18 17 32 32 H 1.08995 * 114.06139 * 138.26913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1208 4.0082 10 1 1.8259 -0.4205 5.2205 11 1 1.8257 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1962 13 7 2.2518 0.0300 -2.3747 14 6 2.6789 -0.5734 -3.4198 15 6 2.9306 0.2018 -4.6874 16 6 2.3593 1.6204 -4.6464 17 6 4.3885 0.1323 -5.1799 18 8 3.8211 -0.0532 -6.4923 19 6 2.5787 -0.5737 -5.9710 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7081 1.1610 3.4844 24 1 2.1800 -1.6467 -1.1721 25 1 2.8589 -1.6380 -3.3931 26 1 2.3832 2.0509 -5.6476 27 1 1.3298 1.5873 -4.2898 28 1 2.9576 2.2338 -3.9729 29 1 4.9378 1.0668 -5.0649 30 1 4.9380 -0.7336 -4.8106 31 1 2.5749 -1.6565 -5.8450 32 1 1.6913 -0.2007 -6.4822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378867318.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = 23.140047 kcal Electronic energy + Delta-G solvation = -13881.026982 eV Core-core repulsion = 11457.884390 eV Total energy + Delta-G solvation = -2423.142592 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47162 -36.48838 -34.22297 -32.18587 -30.46487 -27.12215 -26.49591 -26.19353 -25.21333 -21.80523 -20.19662 -18.58470 -16.99461 -16.11888 -15.80362 -15.69902 -15.39967 -14.83572 -13.55327 -13.47408 -12.57539 -12.51286 -12.34908 -11.92615 -11.81935 -11.47930 -11.10852 -10.96345 -10.83535 -10.58732 -10.30612 -10.19769 -10.10293 -9.60116 -9.43001 -9.01278 -8.52187 -6.97753 -6.14289 -4.22535 2.85482 3.24592 3.29404 3.30939 3.76337 3.83330 4.35894 4.57049 4.98046 5.16950 5.18216 5.24466 5.36176 5.59142 5.86834 5.96359 6.01505 6.12501 6.20036 6.27789 6.44649 6.73665 6.98238 6.99182 7.16104 7.57340 7.78369 7.86699 8.16652 8.32522 8.85766 9.39641 9.44611 10.91624 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061697 B = 0.005740 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.718425 B = 4877.192729 C = 5062.562721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.040 0.960 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.636 5.636 13 N -0.197 5.197 14 C -0.042 4.042 15 C -0.056 4.056 16 C -0.118 4.118 17 C 0.047 3.953 18 O -0.384 6.384 19 C 0.046 3.954 20 H 0.024 0.976 21 H 0.089 0.911 22 H 0.011 0.989 23 H 0.265 0.735 24 H 0.366 0.634 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -1.846 -11.764 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.196 3.804 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.373 5.373 13 N -0.006 5.006 14 C -0.256 4.256 15 C -0.058 4.058 16 C -0.175 4.175 17 C -0.031 4.031 18 O -0.303 6.303 19 C -0.032 4.032 20 H 0.044 0.956 21 H 0.107 0.893 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.202 0.798 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.370 -0.665 -11.320 11.584 hybrid contribution 0.482 -1.847 0.974 2.143 sum 2.851 -2.512 -10.346 11.021 Atomic orbital electron populations 1.22201 0.99200 0.99084 1.00424 1.18465 0.90011 0.93440 0.78435 0.94231 1.21211 1.32229 1.13249 0.90316 0.92356 1.24863 0.94838 0.95002 0.98938 1.69882 1.35990 1.22550 1.23999 0.86487 0.79164 0.79598 0.81732 1.20199 1.21057 1.20199 1.49020 1.73745 1.07536 1.06981 1.73297 1.04281 1.28790 0.94253 1.24860 1.09882 0.96911 0.93912 1.22225 0.95582 0.96646 0.91374 1.21414 1.01916 0.92907 1.01268 1.24087 0.95427 1.01929 0.81663 1.89673 1.30138 1.84048 1.26460 1.24124 0.88611 0.98450 0.91966 0.95631 0.89258 0.96955 0.92517 0.79782 0.89053 0.92511 0.91506 0.91565 0.89098 0.90146 0.90164 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.29 37.16 0.35 -3.36 16 2 C 0.30 7.66 3.23 -69.09 -0.22 7.43 16 3 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.53 -14.32 8.74 -34.44 -0.30 -14.62 16 5 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.64 -14.11 6.09 -5.89 -0.04 -14.15 16 13 N -0.20 -3.93 10.51 32.67 0.34 -3.59 16 14 C -0.04 -0.68 10.03 -13.87 -0.14 -0.82 16 15 C -0.06 -0.75 1.41 -154.58 -0.22 -0.96 16 16 C -0.12 -1.58 8.55 37.15 0.32 -1.26 16 17 C 0.05 0.58 8.34 37.61 0.31 0.89 16 18 O -0.38 -5.13 12.41 -35.23 -0.44 -5.57 16 19 C 0.05 0.54 8.31 37.61 0.31 0.85 16 20 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.37 7.59 8.56 -182.60 -1.56 6.03 16 25 H 0.09 1.36 8.00 -52.49 -0.42 0.94 16 26 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 27 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.08 0.83 8.09 -51.92 -0.42 0.41 16 32 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 274.16 15.07 4.13 4.13 Total: -1.00 -28.58 274.16 -6.13 -34.71 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.05 Total: 3.00 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 0.31 Total: -10.15 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.93 Total: -41.87 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.44 Total: -5.57 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.58 -6.13 -34.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378867318.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.849 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds