Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46647 * 2 1 4 4 C 1.50698 * 109.46910 * 119.99897 * 2 1 3 5 5 H 1.08001 * 119.99817 * 120.00689 * 4 2 1 6 6 C 1.37884 * 120.00238 * 299.99719 * 4 2 1 7 7 N 1.31517 * 119.99789 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46703 * 60.00673 * 8 6 4 10 10 H 1.48498 * 109.46973 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47388 * 300.00511 * 8 6 4 12 12 N 1.46496 * 109.47040 * 240.00126 * 2 1 3 13 13 N 1.40099 * 120.00045 * 90.00038 * 12 2 1 14 14 C 1.28009 * 119.99921 * 179.97438 * 13 12 2 15 15 C 1.50698 * 119.99883 * 180.02562 * 14 13 12 16 16 C 1.52994 * 113.08270 * 348.09312 * 15 14 13 17 17 C 1.54036 * 113.81709 * 120.00235 * 15 14 13 18 18 O 1.44179 * 85.66382 * 136.73615 * 17 15 14 19 19 C 1.44442 * 93.22864 * 335.92808 * 18 17 15 20 20 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47422 * 299.99799 * 1 2 3 22 22 H 1.08999 * 109.47210 * 60.00091 * 1 2 3 23 23 H 0.96999 * 120.00080 * 179.97438 * 7 6 4 24 24 H 0.96999 * 119.99705 * 269.99593 * 12 2 1 25 25 H 1.08002 * 120.00117 * 0.02562 * 14 13 12 26 26 H 1.09004 * 109.47396 * 191.90974 * 16 15 14 27 27 H 1.09003 * 109.47172 * 311.90193 * 16 15 14 28 28 H 1.08993 * 109.47425 * 71.90995 * 16 15 14 29 29 H 1.09002 * 113.86404 * 250.95052 * 17 15 14 30 30 H 1.09002 * 113.86879 * 22.52496 * 17 15 14 31 31 H 1.09008 * 113.74590 * 269.91647 * 19 18 17 32 32 H 1.08995 * 114.06139 * 138.26913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1208 4.0082 10 1 1.8259 -0.4205 5.2205 11 1 1.8257 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1962 13 7 2.2518 0.0300 -2.3747 14 6 2.6789 -0.5734 -3.4198 15 6 2.9306 0.2018 -4.6874 16 6 2.3593 1.6204 -4.6464 17 6 4.3885 0.1323 -5.1799 18 8 3.8211 -0.0532 -6.4923 19 6 2.5787 -0.5737 -5.9710 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7081 1.1610 3.4844 24 1 2.1800 -1.6467 -1.1721 25 1 2.8589 -1.6380 -3.3931 26 1 2.3832 2.0509 -5.6476 27 1 1.3298 1.5873 -4.2898 28 1 2.9576 2.2338 -3.9729 29 1 4.9378 1.0668 -5.0649 30 1 4.9380 -0.7336 -4.8106 31 1 2.5749 -1.6565 -5.8450 32 1 1.6913 -0.2007 -6.4822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378867318.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = 3.852493 kcal Electronic energy + Delta-G solvation = -13881.863354 eV Core-core repulsion = 11457.884390 eV Total energy + Delta-G solvation = -2423.978964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.49996 -38.08854 -35.99890 -33.76976 -32.06608 -28.77179 -27.43112 -27.38443 -27.19773 -23.28220 -22.02107 -19.75690 -18.70649 -17.52918 -17.22035 -16.75619 -16.61562 -16.58923 -15.30694 -14.57903 -14.48370 -14.15061 -13.52325 -13.32620 -13.04977 -12.89469 -12.88087 -12.74845 -12.51721 -12.22078 -12.13249 -11.59495 -11.55058 -11.11830 -10.76215 -10.57879 -10.56416 -8.64282 -8.17758 -6.34709 1.42735 1.44433 1.50604 1.52832 2.22097 2.49103 2.78430 3.11152 3.50606 3.92302 3.94646 4.24902 4.47291 4.67598 4.69483 4.77159 4.92225 4.94749 4.97723 5.03763 5.13569 5.16744 5.22934 5.29256 5.43365 5.56293 5.80412 5.89061 6.20741 6.44015 6.86512 7.37218 7.87569 8.87270 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061697 B = 0.005740 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.718425 B = 4877.192729 C = 5062.562721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.309 3.691 3 H -0.001 1.001 4 C -0.549 4.549 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.268 1.268 12 N -0.653 5.653 13 N -0.244 5.244 14 C 0.000 4.000 15 C -0.069 4.069 16 C -0.115 4.115 17 C 0.052 3.948 18 O -0.397 6.397 19 C 0.055 3.945 20 H 0.029 0.971 21 H 0.067 0.933 22 H 0.017 0.983 23 H 0.267 0.733 24 H 0.371 0.629 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -3.077 -12.804 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.205 3.795 3 H 0.016 0.984 4 C -0.588 4.588 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.390 5.390 13 N -0.051 5.051 14 C -0.216 4.216 15 C -0.072 4.072 16 C -0.172 4.172 17 C -0.026 4.026 18 O -0.316 6.316 19 C -0.023 4.023 20 H 0.048 0.952 21 H 0.086 0.914 22 H 0.036 0.964 23 H 0.076 0.924 24 H 0.208 0.792 25 H 0.128 0.872 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.131 -1.901 -12.379 12.909 hybrid contribution 0.300 -1.454 1.086 1.839 sum 3.430 -3.355 -11.293 12.270 Atomic orbital electron populations 1.22014 0.98988 0.98931 0.99545 1.18041 0.90124 0.91460 0.79903 0.98351 1.21513 1.32502 1.13482 0.91290 0.92195 1.25716 0.94883 0.95641 1.01935 1.70012 1.36827 1.23756 1.24720 0.85432 0.78564 0.78655 0.77874 1.19818 1.20627 1.19301 1.48533 1.75865 1.07435 1.07183 1.73385 1.07839 1.29304 0.94561 1.25572 1.04455 0.98116 0.93411 1.22501 0.97331 0.96632 0.90729 1.21370 1.00723 0.93130 1.01958 1.24152 0.94379 1.03076 0.80949 1.89678 1.30797 1.84334 1.26840 1.24251 0.88684 0.99253 0.90091 0.95224 0.91435 0.96373 0.92408 0.79235 0.87201 0.90636 0.93006 0.92816 0.88261 0.88813 0.88359 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.85 9.29 71.98 0.67 -6.18 16 2 C 0.31 16.25 3.23 44.24 0.14 16.39 16 3 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 4 C -0.55 -29.98 8.74 25.60 0.22 -29.76 16 5 H 0.06 3.17 7.79 -2.91 -0.02 3.14 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -52.00 11.32 21.45 0.24 -51.76 16 8 Si 0.97 42.50 29.54 68.60 2.03 44.52 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 N -0.65 -29.19 6.09 -172.53 -1.05 -30.24 16 13 N -0.24 -9.71 10.51 -50.46 -0.53 -10.24 16 14 C 0.00 -0.01 10.03 88.66 0.89 0.88 16 15 C -0.07 -1.69 1.41 -52.23 -0.07 -1.76 16 16 C -0.11 -2.93 8.55 71.98 0.62 -2.32 16 17 C 0.05 1.13 8.34 72.27 0.60 1.73 16 18 O -0.40 -9.32 12.41 -148.98 -1.85 -11.17 16 19 C 0.05 1.08 8.31 72.28 0.60 1.68 16 20 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 22 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.37 15.29 8.56 -213.32 -1.83 13.47 16 25 H 0.11 2.94 8.00 -2.91 -0.02 2.92 16 26 H 0.07 1.63 8.04 -2.38 -0.02 1.61 16 27 H 0.05 1.47 8.05 -2.39 -0.02 1.45 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 30 H 0.09 1.78 8.09 -2.39 -0.02 1.77 16 31 H 0.10 1.62 8.09 -2.38 -0.02 1.60 16 32 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 Total: -1.00 -61.43 274.16 2.23 -59.20 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.73 Total: 17.57 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.12 Total: -17.89 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -1.34 Total: -92.24 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.85 Total: -11.17 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -61.43 2.23 -59.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378867318.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.053 kcal (2) G-P(sol) polarization free energy of solvation -61.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds