Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46928 * 2 1 4 4 C 1.50702 * 109.47485 * 239.99570 * 2 1 3 5 5 H 1.07997 * 119.99720 * 240.00024 * 4 2 1 6 6 C 1.37878 * 119.99806 * 60.00011 * 4 2 1 7 7 N 1.31520 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00134 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46929 * 59.99794 * 8 6 4 10 10 H 1.48497 * 109.47323 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46800 * 300.00268 * 8 6 4 12 12 N 1.46506 * 109.46853 * 119.99417 * 2 1 3 13 13 N 1.40100 * 120.00092 * 270.00141 * 12 2 1 14 14 C 1.28010 * 119.99979 * 174.63280 * 13 12 2 15 15 C 1.51488 * 121.10733 * 173.65101 * 14 13 12 16 16 C 1.53449 * 107.95998 * 131.28451 * 15 14 13 17 17 C 1.53073 * 109.02682 * 51.90921 * 16 15 14 18 18 O 1.42846 * 109.83228 * 298.64843 * 17 16 15 19 19 C 1.43174 * 114.06049 * 64.78109 * 18 17 16 20 20 H 1.09009 * 109.46761 * 60.00403 * 1 2 3 21 21 H 1.08995 * 109.47211 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47475 * 300.00873 * 1 2 3 23 23 H 0.96998 * 120.00328 * 180.02562 * 7 6 4 24 24 H 0.96995 * 119.99758 * 90.00604 * 12 2 1 25 25 H 1.08994 * 109.76556 * 250.89950 * 15 14 13 26 26 H 1.09001 * 109.76574 * 11.61739 * 15 14 13 27 27 H 1.08998 * 109.54253 * 171.77104 * 16 15 14 28 28 H 1.08996 * 109.54580 * 291.95202 * 16 15 14 29 29 H 1.09004 * 109.41224 * 58.75900 * 17 16 15 30 30 H 1.08997 * 109.40933 * 178.53874 * 17 16 15 31 31 H 1.09002 * 109.68286 * 184.70579 * 19 18 17 32 32 H 1.09001 * 109.68717 * 64.14417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0079 9 1 1.8260 -2.5205 -4.0075 10 1 1.8261 -0.4209 -5.2204 11 1 3.8065 -1.1211 -4.0080 12 7 2.0183 -0.6905 1.1963 13 7 2.2517 0.0301 2.3749 14 6 2.5792 -0.5865 3.4478 15 6 2.9756 0.1732 4.6971 16 6 2.1877 -0.4121 5.8767 17 6 2.3755 -1.9311 5.8976 18 8 1.8670 -2.4990 4.6895 19 6 2.5771 -2.0989 3.5124 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 0.7090 1.1612 -3.4845 24 1 2.1800 -1.6466 1.1723 25 1 4.0448 0.0582 4.8748 26 1 2.7332 1.2293 4.5788 27 1 2.5575 0.0139 6.8094 28 1 1.1299 -0.1756 5.7619 29 1 3.4365 -2.1638 5.9887 30 1 1.8393 -2.3507 6.7488 31 1 2.0820 -2.5036 2.6297 32 1 3.6024 -2.4659 3.5596 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379392230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = -11.194653 kcal Electronic energy + Delta-G solvation = -14118.924503 eV Core-core repulsion = 11694.293046 eV Total energy + Delta-G solvation = -2424.631457 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09979 -36.32252 -34.20853 -32.93237 -31.21025 -28.58097 -26.40807 -25.20539 -25.04265 -22.07621 -20.31273 -18.83415 -17.21664 -16.08817 -15.98565 -15.16281 -14.88773 -14.32731 -13.92113 -13.40184 -13.29094 -12.70073 -12.50649 -11.98806 -11.43235 -11.17364 -11.09675 -10.96184 -10.90178 -10.72103 -10.37204 -10.24240 -10.15105 -9.91660 -9.08157 -8.80890 -8.49295 -6.91042 -6.11882 -4.19919 2.81433 3.26755 3.31321 3.33059 3.86122 4.05994 4.38271 4.89321 4.99444 5.04322 5.20470 5.28451 5.40892 5.53719 5.61964 5.74651 5.84544 6.02537 6.26621 6.43083 6.76786 7.00025 7.02402 7.18658 7.26433 7.59927 7.81022 7.88564 8.19214 8.34032 8.87903 9.39427 9.46849 10.94239 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058759 B = 0.006392 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.406371 B = 4379.468440 C = 4550.311578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.298 3.702 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.634 5.634 13 N -0.191 5.191 14 C -0.048 4.048 15 C -0.045 4.045 16 C -0.150 4.150 17 C 0.060 3.940 18 O -0.379 6.379 19 C 0.081 3.919 20 H 0.090 0.910 21 H 0.025 0.975 22 H 0.011 0.989 23 H 0.265 0.735 24 H 0.367 0.633 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -3.510 13.151 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.196 3.804 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.373 5.373 13 N -0.003 5.003 14 C -0.242 4.242 15 C -0.084 4.084 16 C -0.188 4.188 17 C -0.017 4.017 18 O -0.296 6.296 19 C 0.002 3.998 20 H 0.108 0.892 21 H 0.044 0.956 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.205 0.795 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.794 -2.505 12.449 13.002 hybrid contribution 0.606 -1.452 -0.710 1.726 sum 3.400 -3.957 11.739 12.846 Atomic orbital electron populations 1.22224 0.99267 0.99144 1.00437 1.18499 0.89968 0.93547 0.78413 0.94093 1.21189 1.32199 1.13242 0.90240 0.92309 1.24859 0.94846 0.95008 0.98924 1.69885 1.36044 1.22534 1.23975 0.86484 0.79155 0.79605 0.81710 1.20182 1.21080 1.20189 1.49013 1.74384 1.07881 1.06000 1.73471 1.04269 1.28464 0.94110 1.24773 1.10336 0.93876 0.95253 1.20310 0.99043 0.99325 0.89771 1.22209 1.01842 0.96395 0.98399 1.22506 0.98670 0.93125 0.87394 1.87986 1.57493 1.69639 1.14495 1.21958 0.96705 0.92647 0.88484 0.89194 0.95578 0.97017 0.92532 0.79511 0.90931 0.90305 0.90787 0.90888 0.93311 0.89226 0.88762 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.29 37.16 0.35 -3.50 16 2 C 0.30 7.80 3.23 -69.08 -0.22 7.58 16 3 H 0.04 1.19 8.14 -51.92 -0.42 0.76 16 4 C -0.53 -14.46 8.74 -34.44 -0.30 -14.76 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.63 -14.52 5.91 -5.88 -0.03 -14.56 16 13 N -0.19 -4.05 11.44 35.95 0.41 -3.64 16 14 C -0.05 -0.84 6.70 -78.19 -0.52 -1.37 16 15 C -0.05 -0.60 6.25 -27.26 -0.17 -0.77 16 16 C -0.15 -1.68 6.17 -26.46 -0.16 -1.84 16 17 C 0.06 0.68 6.71 37.20 0.25 0.93 16 18 O -0.38 -5.85 10.78 -35.23 -0.38 -6.23 16 19 C 0.08 1.29 6.68 36.34 0.24 1.53 16 20 H 0.09 2.44 6.07 -51.92 -0.32 2.12 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.37 7.84 6.34 -182.60 -1.16 6.68 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.60 5.96 -51.93 -0.31 1.29 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 265.27 15.07 4.00 4.00 Total: -1.00 -29.39 265.27 -6.59 -35.98 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.55 Total: 3.37 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.64 Total: -10.49 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 1.00 Total: -42.58 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.38 Total: -6.23 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.39 -6.59 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379392230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.790 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds