Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46928 * 2 1 4 4 C 1.50702 * 109.47485 * 239.99570 * 2 1 3 5 5 H 1.07997 * 119.99720 * 240.00024 * 4 2 1 6 6 C 1.37878 * 119.99806 * 60.00011 * 4 2 1 7 7 N 1.31520 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00134 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46929 * 59.99794 * 8 6 4 10 10 H 1.48497 * 109.47323 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46800 * 300.00268 * 8 6 4 12 12 N 1.46506 * 109.46853 * 119.99417 * 2 1 3 13 13 N 1.40100 * 120.00092 * 270.00141 * 12 2 1 14 14 C 1.28010 * 119.99979 * 174.63280 * 13 12 2 15 15 C 1.51488 * 121.10733 * 173.65101 * 14 13 12 16 16 C 1.53449 * 107.95998 * 131.28451 * 15 14 13 17 17 C 1.53073 * 109.02682 * 51.90921 * 16 15 14 18 18 O 1.42846 * 109.83228 * 298.64843 * 17 16 15 19 19 C 1.43174 * 114.06049 * 64.78109 * 18 17 16 20 20 H 1.09009 * 109.46761 * 60.00403 * 1 2 3 21 21 H 1.08995 * 109.47211 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47475 * 300.00873 * 1 2 3 23 23 H 0.96998 * 120.00328 * 180.02562 * 7 6 4 24 24 H 0.96995 * 119.99758 * 90.00604 * 12 2 1 25 25 H 1.08994 * 109.76556 * 250.89950 * 15 14 13 26 26 H 1.09001 * 109.76574 * 11.61739 * 15 14 13 27 27 H 1.08998 * 109.54253 * 171.77104 * 16 15 14 28 28 H 1.08996 * 109.54580 * 291.95202 * 16 15 14 29 29 H 1.09004 * 109.41224 * 58.75900 * 17 16 15 30 30 H 1.08997 * 109.40933 * 178.53874 * 17 16 15 31 31 H 1.09002 * 109.68286 * 184.70579 * 19 18 17 32 32 H 1.09001 * 109.68717 * 64.14417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0079 9 1 1.8260 -2.5205 -4.0075 10 1 1.8261 -0.4209 -5.2204 11 1 3.8065 -1.1211 -4.0080 12 7 2.0183 -0.6905 1.1963 13 7 2.2517 0.0301 2.3749 14 6 2.5792 -0.5865 3.4478 15 6 2.9756 0.1732 4.6971 16 6 2.1877 -0.4121 5.8767 17 6 2.3755 -1.9311 5.8976 18 8 1.8670 -2.4990 4.6895 19 6 2.5771 -2.0989 3.5124 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 0.7090 1.1612 -3.4845 24 1 2.1800 -1.6466 1.1723 25 1 4.0448 0.0582 4.8748 26 1 2.7332 1.2293 4.5788 27 1 2.5575 0.0139 6.8094 28 1 1.1299 -0.1756 5.7619 29 1 3.4365 -2.1638 5.9887 30 1 1.8393 -2.3507 6.7488 31 1 2.0820 -2.5036 2.6297 32 1 3.6024 -2.4659 3.5596 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379392230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = -31.291390 kcal Electronic energy + Delta-G solvation = -14119.795963 eV Core-core repulsion = 11694.293046 eV Total energy + Delta-G solvation = -2425.502917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.30158 -37.90999 -35.98075 -34.22998 -32.95307 -30.09583 -28.00329 -27.24029 -26.21980 -23.27319 -22.15652 -20.25419 -18.76683 -17.79123 -17.30138 -16.79045 -16.25020 -15.66251 -15.23680 -14.91750 -14.63167 -14.38504 -13.84638 -13.75123 -13.23828 -12.90042 -12.72845 -12.47519 -12.21130 -12.13633 -12.06509 -11.98778 -11.74826 -11.19696 -11.05358 -10.57164 -10.15504 -8.61210 -8.18422 -6.35286 1.38522 1.43134 1.45090 1.53037 2.21330 2.48416 2.97761 3.10756 3.68794 3.95202 4.06712 4.13015 4.34614 4.45792 4.63789 4.70418 4.75631 4.91181 4.95128 5.03522 5.10048 5.20841 5.32375 5.42076 5.54952 5.77333 5.85791 6.15849 6.22445 6.41726 6.84210 7.36350 7.81221 8.87235 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058759 B = 0.006392 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.406371 B = 4379.468440 C = 4550.311578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.307 3.693 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.061 0.939 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.651 5.651 13 N -0.245 5.245 14 C -0.017 4.017 15 C -0.051 4.051 16 C -0.143 4.143 17 C 0.049 3.951 18 O -0.398 6.398 19 C 0.080 3.920 20 H 0.070 0.930 21 H 0.027 0.973 22 H 0.013 0.987 23 H 0.267 0.733 24 H 0.371 0.629 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -4.619 14.706 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.203 3.797 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.197 1.197 12 N -0.390 5.390 13 N -0.055 5.055 14 C -0.213 4.213 15 C -0.090 4.090 16 C -0.181 4.181 17 C -0.027 4.027 18 O -0.316 6.316 19 C 0.000 4.000 20 H 0.089 0.911 21 H 0.047 0.953 22 H 0.032 0.968 23 H 0.076 0.924 24 H 0.210 0.790 25 H 0.120 0.880 26 H 0.092 0.908 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.930 -3.618 14.029 15.012 hybrid contribution 0.300 -1.109 -0.929 1.477 sum 4.230 -4.727 13.101 14.555 Atomic orbital electron populations 1.22045 0.99220 0.98862 0.99492 1.18088 0.89964 0.91654 0.79951 0.98143 1.21477 1.32576 1.13518 0.91159 0.92123 1.25735 0.94845 0.95644 1.01964 1.70014 1.36838 1.23740 1.24761 0.85403 0.78619 0.78605 0.77720 1.19320 1.20548 1.19680 1.48508 1.76468 1.07760 1.06240 1.73533 1.08178 1.29134 0.94666 1.25761 1.04750 0.95600 0.95152 1.20596 1.01154 0.98721 0.88563 1.22203 1.00569 0.96436 0.98906 1.22871 1.00435 0.93049 0.86304 1.87978 1.58160 1.70124 1.15350 1.21937 0.97969 0.91331 0.88714 0.91148 0.95335 0.96755 0.92367 0.79003 0.87976 0.90797 0.86924 0.92583 0.91073 0.86837 0.90456 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.20 9.29 71.98 0.67 -6.53 16 2 C 0.31 16.73 3.23 44.24 0.14 16.87 16 3 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 4 C -0.55 -30.61 8.74 25.60 0.22 -30.39 16 5 H 0.06 3.27 7.79 -2.91 -0.02 3.25 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 8 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.65 -30.67 5.91 -172.50 -1.02 -31.69 16 13 N -0.25 -10.56 11.44 -40.07 -0.46 -11.02 16 14 C -0.02 -0.58 6.70 47.00 0.32 -0.27 16 15 C -0.05 -1.22 6.25 30.25 0.19 -1.03 16 16 C -0.14 -2.68 6.17 30.77 0.19 -2.49 16 17 C 0.05 0.93 6.71 72.01 0.48 1.41 16 18 O -0.40 -11.35 10.78 -148.98 -1.61 -12.96 16 19 C 0.08 2.41 6.68 71.45 0.48 2.88 16 20 H 0.07 3.96 6.07 -2.38 -0.01 3.94 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.37 16.28 6.34 -213.33 -1.35 14.92 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 2.61 5.96 -2.39 -0.01 2.59 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.86 265.27 2.08 -62.78 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.25 Total: 18.38 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 3.14 Total: -18.08 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -1.24 Total: -95.24 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.61 Total: -12.96 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -64.86 2.08 -62.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379392230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.491 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds