Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47429 * 2 1 4 4 C 1.50710 * 109.47284 * 120.00048 * 2 1 3 5 5 H 1.07994 * 119.99650 * 31.21264 * 4 2 1 6 6 C 1.37869 * 119.99840 * 211.21231 * 4 2 1 7 7 N 1.31513 * 120.00638 * 351.44722 * 6 4 2 8 8 Si 1.86803 * 119.99843 * 171.44169 * 6 4 2 9 9 H 1.48509 * 109.46951 * 90.00030 * 8 6 4 10 10 H 1.48499 * 109.47293 * 209.99948 * 8 6 4 11 11 H 1.48496 * 109.47430 * 330.00479 * 8 6 4 12 12 N 1.46502 * 109.47553 * 239.99850 * 2 1 3 13 13 N 1.40097 * 119.99600 * 89.99754 * 12 2 1 14 14 C 1.28015 * 119.99992 * 185.30547 * 13 12 2 15 15 C 1.51486 * 121.11269 * 185.40961 * 14 13 12 16 16 C 1.53447 * 107.96360 * 131.53440 * 15 14 13 17 17 C 1.53069 * 109.02076 * 51.91268 * 16 15 14 18 18 O 1.42846 * 109.83604 * 298.64589 * 17 16 15 19 19 C 1.42748 * 114.15651 * 64.63937 * 18 17 16 20 20 H 1.09003 * 109.46881 * 175.14432 * 1 2 3 21 21 H 1.08995 * 109.47029 * 295.14295 * 1 2 3 22 22 H 1.08993 * 109.47175 * 55.14532 * 1 2 3 23 23 H 0.97008 * 119.99743 * 4.04148 * 7 6 4 24 24 H 0.96999 * 119.99960 * 270.00782 * 12 2 1 25 25 H 1.09000 * 109.76579 * 251.15769 * 15 14 13 26 26 H 1.09003 * 109.76312 * 11.87308 * 15 14 13 27 27 H 1.09000 * 109.54552 * 171.77383 * 16 15 14 28 28 H 1.09001 * 109.54609 * 291.95745 * 16 15 14 29 29 H 1.09000 * 109.41558 * 58.76374 * 17 16 15 30 30 H 1.09005 * 109.40262 * 178.54099 * 17 16 15 31 31 H 1.08996 * 109.64673 * 184.86981 * 19 18 17 32 32 H 1.08997 * 109.51043 * 64.43687 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 1.4582 -1.5180 1.6599 6 6 3.2249 -0.3293 1.8079 7 7 4.0055 0.5344 1.1961 8 14 3.7321 -1.0397 3.4595 9 1 4.5191 -2.2806 3.2439 10 1 4.5612 -0.0486 4.1911 11 1 2.5193 -1.3551 4.2562 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.5807 -0.5866 -3.4473 15 6 2.9568 0.1731 -4.7029 16 6 4.2652 -0.4208 -5.2412 17 6 4.1097 -1.9383 -5.3671 18 8 3.8511 -2.5073 -4.0826 19 6 2.6127 -2.0992 -3.5016 20 1 -0.3633 -1.0240 -0.0870 21 1 -0.3633 0.4366 0.9303 22 1 -0.3633 0.5873 -0.8432 23 1 3.7159 0.9478 0.3677 24 1 2.1800 -1.6468 -1.1721 25 1 2.1690 0.0658 -5.4485 26 1 3.0995 1.2276 -4.4667 27 1 4.4837 0.0059 -6.2202 28 1 5.0796 -0.1920 -4.5538 29 1 3.2796 -2.1632 -6.0367 30 1 5.0272 -2.3639 -5.7737 31 1 2.5299 -2.5046 -2.4932 32 1 1.7866 -2.4623 -4.1129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379392231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = -17.843099 kcal Electronic energy + Delta-G solvation = -14313.719111 eV Core-core repulsion = 11888.799356 eV Total energy + Delta-G solvation = -2424.919755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.01673 -36.26700 -34.26189 -32.82845 -31.18634 -28.74491 -26.43291 -25.02883 -24.58159 -21.99275 -20.61015 -18.68208 -17.30290 -16.51673 -15.89247 -15.06958 -14.39789 -14.12286 -13.82232 -13.60625 -13.16119 -12.93624 -12.58755 -12.26843 -11.42583 -11.10416 -11.00816 -10.93171 -10.87444 -10.76891 -10.59387 -10.18997 -9.94457 -9.69509 -8.86757 -8.66812 -8.50209 -6.75446 -6.52526 -4.32361 2.96360 3.36946 3.39212 3.56443 3.98392 4.18958 4.42244 4.99157 5.08475 5.14233 5.28906 5.42363 5.50234 5.61980 5.69488 5.83533 5.93903 6.12667 6.34127 6.36612 6.46366 6.64314 6.64995 6.96551 7.14283 7.34853 7.44088 8.04918 8.29445 8.54379 8.69923 9.48527 9.55181 10.85109 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036679 B = 0.007998 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.196801 B = 3500.049131 C = 3797.077768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.045 0.955 4 C -0.605 4.605 5 H 0.055 0.945 6 C 0.031 3.969 7 N -0.885 5.885 8 Si 1.072 2.928 9 H -0.287 1.287 10 H -0.282 1.282 11 H -0.285 1.285 12 N -0.631 5.631 13 N -0.200 5.200 14 C -0.054 4.054 15 C -0.044 4.044 16 C -0.150 4.150 17 C 0.062 3.938 18 O -0.380 6.380 19 C 0.084 3.916 20 H 0.036 0.964 21 H 0.051 0.949 22 H 0.027 0.973 23 H 0.280 0.720 24 H 0.362 0.638 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -3.055 -10.604 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.167 3.833 3 H 0.063 0.937 4 C -0.645 4.645 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.518 5.518 8 Si 0.900 3.100 9 H -0.213 1.213 10 H -0.208 1.208 11 H -0.211 1.211 12 N -0.372 5.372 13 N -0.013 5.013 14 C -0.247 4.247 15 C -0.083 4.083 16 C -0.189 4.189 17 C -0.015 4.015 18 O -0.297 6.297 19 C 0.004 3.996 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.092 0.908 24 H 0.202 0.798 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.571 -2.166 -8.869 9.147 hybrid contribution -1.259 -1.057 -1.488 2.217 sum -1.829 -3.223 -10.357 11.000 Atomic orbital electron populations 1.22160 0.99462 0.99467 0.99211 1.18712 0.88902 0.94698 0.80942 0.93716 1.22139 1.10136 1.22155 1.10056 0.92668 1.26044 0.92706 0.95726 1.03391 1.70699 1.36131 1.26087 1.18911 0.83511 0.75821 0.76068 0.74632 1.21328 1.20754 1.21130 1.50545 1.73401 1.08100 1.05136 1.73446 1.04437 1.29234 0.94141 1.24681 1.11194 0.93642 0.95228 1.20280 0.96172 0.99186 0.92708 1.22193 0.98731 0.96421 1.01519 1.22485 1.00709 0.93140 0.85177 1.87899 1.39184 1.69192 1.33434 1.21897 0.86213 0.92843 0.98625 0.94481 0.92952 0.95429 0.90813 0.79802 0.91373 0.90533 0.90851 0.90842 0.93468 0.89292 0.88926 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.50 37.16 0.35 -2.83 16 2 C 0.27 6.84 2.92 -69.08 -0.20 6.63 16 3 H 0.04 1.26 6.76 -51.93 -0.35 0.91 16 4 C -0.60 -16.54 8.52 -34.44 -0.29 -16.83 16 5 H 0.06 1.49 7.83 -52.49 -0.41 1.08 16 6 C 0.03 0.87 5.44 -17.82 -0.10 0.78 16 7 N -0.88 -26.60 13.62 55.43 0.75 -25.84 16 8 Si 1.07 24.57 29.91 -169.99 -5.08 19.49 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.63 -15.12 5.98 -5.88 -0.04 -15.16 16 13 N -0.20 -4.50 11.44 35.96 0.41 -4.09 16 14 C -0.05 -1.02 6.71 -78.18 -0.52 -1.54 16 15 C -0.04 -0.65 6.25 -27.27 -0.17 -0.82 16 16 C -0.15 -1.94 6.17 -26.46 -0.16 -2.11 16 17 C 0.06 0.80 6.71 37.19 0.25 1.05 16 18 O -0.38 -6.56 10.76 -35.23 -0.38 -6.94 16 19 C 0.08 1.46 6.83 36.35 0.25 1.71 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.28 8.60 6.73 -40.82 -0.27 8.33 16 24 H 0.36 8.52 6.16 -182.60 -1.12 7.39 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.75 5.63 -51.93 -0.29 1.45 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 266.60 15.07 4.02 4.02 Total: -1.00 -30.37 266.60 -6.39 -36.76 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.48 Total: 5.73 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.60 Total: -13.97 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 1.13 Total: -45.09 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.38 Total: -6.94 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.37 -6.39 -36.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379392231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.914 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds