Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47429 * 2 1 4 4 C 1.50710 * 109.47284 * 120.00048 * 2 1 3 5 5 H 1.07994 * 119.99650 * 31.21264 * 4 2 1 6 6 C 1.37869 * 119.99840 * 211.21231 * 4 2 1 7 7 N 1.31513 * 120.00638 * 351.44722 * 6 4 2 8 8 Si 1.86803 * 119.99843 * 171.44169 * 6 4 2 9 9 H 1.48509 * 109.46951 * 90.00030 * 8 6 4 10 10 H 1.48499 * 109.47293 * 209.99948 * 8 6 4 11 11 H 1.48496 * 109.47430 * 330.00479 * 8 6 4 12 12 N 1.46502 * 109.47553 * 239.99850 * 2 1 3 13 13 N 1.40097 * 119.99600 * 89.99754 * 12 2 1 14 14 C 1.28015 * 119.99992 * 185.30547 * 13 12 2 15 15 C 1.51486 * 121.11269 * 185.40961 * 14 13 12 16 16 C 1.53447 * 107.96360 * 131.53440 * 15 14 13 17 17 C 1.53069 * 109.02076 * 51.91268 * 16 15 14 18 18 O 1.42846 * 109.83604 * 298.64589 * 17 16 15 19 19 C 1.42748 * 114.15651 * 64.63937 * 18 17 16 20 20 H 1.09003 * 109.46881 * 175.14432 * 1 2 3 21 21 H 1.08995 * 109.47029 * 295.14295 * 1 2 3 22 22 H 1.08993 * 109.47175 * 55.14532 * 1 2 3 23 23 H 0.97008 * 119.99743 * 4.04148 * 7 6 4 24 24 H 0.96999 * 119.99960 * 270.00782 * 12 2 1 25 25 H 1.09000 * 109.76579 * 251.15769 * 15 14 13 26 26 H 1.09003 * 109.76312 * 11.87308 * 15 14 13 27 27 H 1.09000 * 109.54552 * 171.77383 * 16 15 14 28 28 H 1.09001 * 109.54609 * 291.95745 * 16 15 14 29 29 H 1.09000 * 109.41558 * 58.76374 * 17 16 15 30 30 H 1.09005 * 109.40262 * 178.54099 * 17 16 15 31 31 H 1.08996 * 109.64673 * 184.86981 * 19 18 17 32 32 H 1.08997 * 109.51043 * 64.43687 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 1.4582 -1.5180 1.6599 6 6 3.2249 -0.3293 1.8079 7 7 4.0055 0.5344 1.1961 8 14 3.7321 -1.0397 3.4595 9 1 4.5191 -2.2806 3.2439 10 1 4.5612 -0.0486 4.1911 11 1 2.5193 -1.3551 4.2562 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.5807 -0.5866 -3.4473 15 6 2.9568 0.1731 -4.7029 16 6 4.2652 -0.4208 -5.2412 17 6 4.1097 -1.9383 -5.3671 18 8 3.8511 -2.5073 -4.0826 19 6 2.6127 -2.0992 -3.5016 20 1 -0.3633 -1.0240 -0.0870 21 1 -0.3633 0.4366 0.9303 22 1 -0.3633 0.5873 -0.8432 23 1 3.7159 0.9478 0.3677 24 1 2.1800 -1.6468 -1.1721 25 1 2.1690 0.0658 -5.4485 26 1 3.0995 1.2276 -4.4667 27 1 4.4837 0.0059 -6.2202 28 1 5.0796 -0.1920 -4.5538 29 1 3.2796 -2.1632 -6.0367 30 1 5.0272 -2.3639 -5.7737 31 1 2.5299 -2.5046 -2.4932 32 1 1.7866 -2.4623 -4.1129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379392231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = -39.061239 kcal Electronic energy + Delta-G solvation = -14314.639198 eV Core-core repulsion = 11888.799356 eV Total energy + Delta-G solvation = -2425.839843 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34545 -37.96900 -36.04687 -34.21237 -33.02226 -30.27998 -28.02919 -26.69943 -26.24723 -23.34642 -22.40311 -20.19482 -19.12565 -18.12834 -17.20327 -16.44900 -15.93716 -15.71370 -15.53939 -15.32504 -14.57401 -14.36832 -14.10401 -13.82507 -13.22461 -12.90329 -12.66939 -12.51497 -12.19550 -12.12280 -11.99696 -11.90442 -11.56041 -11.23834 -10.78344 -10.65004 -10.14442 -8.77365 -8.48047 -6.52906 1.41939 1.52074 1.58887 1.78731 2.27388 2.52430 2.97033 3.24549 3.68752 3.91982 4.02903 4.08752 4.30006 4.40290 4.47209 4.61264 4.68027 4.76984 4.78029 4.89263 4.98221 5.06478 5.28233 5.31426 5.34242 5.57562 6.04290 6.11515 6.19387 6.47995 6.69579 7.36963 7.84584 8.63454 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036679 B = 0.007998 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.196801 B = 3500.049131 C = 3797.077768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H 0.007 0.993 4 C -0.614 4.614 5 H 0.057 0.943 6 C -0.020 4.020 7 N -0.918 5.918 8 Si 1.121 2.879 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.263 1.263 12 N -0.648 5.648 13 N -0.249 5.249 14 C -0.028 4.028 15 C -0.048 4.048 16 C -0.144 4.144 17 C 0.052 3.948 18 O -0.404 6.404 19 C 0.083 3.917 20 H 0.045 0.955 21 H 0.056 0.944 22 H 0.035 0.965 23 H 0.261 0.739 24 H 0.362 0.638 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -4.139 -12.267 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.025 0.975 4 C -0.654 4.654 5 H 0.075 0.925 6 C -0.222 4.222 7 N -0.553 5.553 8 Si 0.942 3.058 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.187 1.187 12 N -0.389 5.389 13 N -0.059 5.059 14 C -0.223 4.223 15 C -0.088 4.088 16 C -0.182 4.182 17 C -0.024 4.024 18 O -0.322 6.322 19 C 0.004 3.996 20 H 0.064 0.936 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.201 0.799 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.133 0.867 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.888 -3.252 -10.546 11.072 hybrid contribution -1.155 -0.744 -1.256 1.862 sum -2.043 -3.996 -11.802 12.627 Atomic orbital electron populations 1.22005 0.97057 1.00208 0.99808 1.18506 0.90738 0.92486 0.81397 0.97537 1.22435 1.10026 1.21864 1.11061 0.92471 1.27515 0.93037 0.95336 1.06287 1.70839 1.37152 1.28354 1.18931 0.82903 0.76446 0.75581 0.70864 1.20304 1.20853 1.18724 1.49809 1.75551 1.07673 1.05825 1.73487 1.08245 1.29604 0.94600 1.25678 1.05888 0.95363 0.95371 1.20545 0.98429 0.98366 0.91448 1.22198 0.96409 0.96741 1.02902 1.22856 1.03012 0.92845 0.83703 1.87883 1.38829 1.69756 1.35689 1.21873 0.87729 0.91541 0.98495 0.93555 0.92467 0.94621 0.92835 0.79920 0.87841 0.91269 0.86675 0.93428 0.90679 0.86989 0.91087 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 9.50 71.98 0.68 -5.16 16 2 C 0.27 14.27 2.92 44.25 0.13 14.40 16 3 H 0.01 0.39 6.76 -2.39 -0.02 0.38 16 4 C -0.61 -34.28 8.52 25.60 0.22 -34.06 16 5 H 0.06 3.09 7.83 -2.91 -0.02 3.07 16 6 C -0.02 -1.11 5.44 84.65 0.46 -0.65 16 7 N -0.92 -57.21 13.62 21.44 0.29 -56.92 16 8 Si 1.12 49.73 29.91 68.60 2.05 51.79 16 9 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 N -0.65 -31.98 5.98 -172.51 -1.03 -33.01 16 13 N -0.25 -11.40 11.44 -40.07 -0.46 -11.85 16 14 C -0.03 -1.03 6.71 47.00 0.32 -0.71 16 15 C -0.05 -1.31 6.25 30.25 0.19 -1.12 16 16 C -0.14 -3.26 6.17 30.77 0.19 -3.07 16 17 C 0.05 1.14 6.71 72.01 0.48 1.62 16 18 O -0.40 -13.12 10.76 -148.98 -1.60 -14.72 16 19 C 0.08 2.78 6.83 71.46 0.49 3.27 16 20 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 22 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.26 16.94 6.73 -92.70 -0.62 16.32 16 24 H 0.36 17.54 6.16 -213.32 -1.31 16.22 16 25 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.07 2.69 5.63 -2.39 -0.01 2.68 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -68.16 266.60 2.35 -65.81 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.06 Total: 24.39 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.16 Total: -25.49 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -1.20 Total: -101.78 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.60 Total: -14.72 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.05 Total: 51.79 kcal Total: -68.16 2.35 -65.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379392231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.748 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds