Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46805 * 125.20394 * 2 1 4 4 N 1.48070 * 106.14748 * 197.56029 * 3 2 1 5 5 C 1.46898 * 110.99957 * 91.90683 * 4 3 2 6 6 C 1.53000 * 109.46954 * 169.99808 * 5 4 3 7 7 C 1.53001 * 109.47044 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47185 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99984 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00088 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00086 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99890 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46955 * 90.00400 * 12 10 8 14 14 H 1.48499 * 109.47330 * 210.00083 * 12 10 8 15 15 H 1.48496 * 109.47326 * 330.00620 * 12 10 8 16 16 C 1.48240 * 103.15711 * 332.96256 * 4 3 2 17 17 C 1.34851 * 125.20656 * 179.68874 * 2 1 3 18 18 O 1.21282 * 125.74913 * 359.62164 * 17 2 1 19 19 H 1.09001 * 109.47060 * 90.00640 * 1 2 3 20 20 H 1.09004 * 109.47073 * 210.00129 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.00211 * 1 2 3 22 22 H 1.09003 * 110.11721 * 316.73221 * 3 2 1 23 23 H 1.09000 * 110.11574 * 78.32278 * 3 2 1 24 24 H 1.09002 * 109.47123 * 289.99761 * 5 4 3 25 25 H 1.09004 * 109.47168 * 49.99917 * 5 4 3 26 26 H 1.09002 * 109.47168 * 299.99927 * 6 5 4 27 27 H 1.09004 * 109.47094 * 60.00064 * 6 5 4 28 28 H 1.09002 * 109.47062 * 299.99971 * 7 6 5 29 29 H 1.08994 * 109.47268 * 59.99891 * 7 6 5 30 30 H 0.96999 * 120.00025 * 179.97438 * 11 10 8 31 31 H 1.08996 * 110.37653 * 145.16650 * 16 4 3 32 32 H 1.08995 * 110.37745 * 267.41364 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3114 1.1996 0.0000 4 7 3.6568 0.7543 -0.4291 5 6 3.8126 0.8772 -1.8846 6 6 5.2779 0.6501 -2.2616 7 6 5.4403 0.7787 -3.7776 8 6 6.8834 0.5543 -4.1490 9 1 7.6120 0.3417 -3.3806 10 6 7.2739 0.6215 -5.4696 11 7 8.5334 0.4263 -5.7937 12 14 6.0138 0.9900 -6.7985 13 1 5.9294 2.4579 -7.0072 14 1 6.4239 0.3327 -8.0654 15 1 4.6866 0.4725 -6.3793 16 6 3.6917 -0.6669 -0.0092 17 6 2.2425 -1.1018 0.0060 18 8 1.8468 -2.2482 0.0187 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.9185 1.9355 -0.7015 23 1 2.3582 1.6253 1.0023 24 1 3.1901 0.1326 -2.3808 25 1 3.5067 1.8749 -2.1998 26 1 5.9004 1.3947 -1.7654 27 1 5.5837 -0.3476 -1.9464 28 1 4.8178 0.0344 -4.2741 29 1 5.1346 1.7764 -4.0924 30 1 8.8080 0.4732 -6.7229 31 1 4.2610 -1.2602 -0.7247 32 1 4.1240 -0.7578 0.9872 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379395447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -21.735385 kcal Electronic energy + Delta-G solvation = -14022.306794 eV Core-core repulsion = 11597.218257 eV Total energy + Delta-G solvation = -2425.088537 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78591 -37.30567 -35.05753 -33.37578 -31.60576 -28.80658 -27.69877 -26.33199 -23.74655 -21.60326 -20.43100 -19.68851 -16.98619 -16.78708 -16.41001 -15.64219 -15.15420 -14.65894 -14.08272 -13.97317 -13.65984 -13.18315 -12.82049 -12.60193 -12.52419 -12.26020 -11.75154 -11.51473 -11.13231 -10.81260 -10.34629 -9.98612 -9.76161 -9.67713 -9.20588 -8.97283 -8.74495 -8.54283 -6.04505 -4.02614 2.41713 2.76997 3.29573 3.37380 3.40434 3.71489 4.31616 4.44527 4.76577 4.88325 5.10902 5.16582 5.27535 5.29890 5.44051 5.45192 5.59840 5.61850 5.97088 6.08609 6.17595 6.44052 6.52165 6.86523 6.90437 6.97581 7.28571 7.40717 7.78557 7.98163 8.53811 9.00937 9.57859 11.09028 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048068 B = 0.006190 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.372796 B = 4522.093256 C = 4634.087268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.650 5.650 3 C 0.249 3.751 4 N -0.497 5.497 5 C 0.035 3.965 6 C -0.095 4.095 7 C -0.013 4.013 8 C -0.520 4.520 9 H 0.073 0.927 10 C 0.066 3.934 11 N -0.903 5.903 12 Si 0.880 3.120 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.003 3.997 17 C 0.494 3.506 18 O -0.527 6.527 19 H 0.055 0.945 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.116 0.884 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 2.776 11.438 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.388 5.388 3 C 0.037 3.963 4 N -0.221 5.221 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.051 4.051 8 C -0.558 4.558 9 H 0.091 0.909 10 C -0.135 4.135 11 N -0.542 5.542 12 Si 0.707 3.293 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.128 4.128 17 C 0.281 3.719 18 O -0.402 6.402 19 H 0.074 0.926 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.666 2.503 11.513 18.813 hybrid contribution -1.251 -0.136 -1.260 1.781 sum -15.917 2.367 10.253 19.081 Atomic orbital electron populations 1.21459 0.77569 1.03002 1.01888 1.48903 1.06964 1.08695 1.74267 1.23232 0.83491 0.87396 1.02167 1.65674 1.24388 1.15417 1.16641 1.22728 1.00308 1.01441 0.84735 1.21451 0.91743 1.01556 0.98592 1.19554 0.97990 0.96150 0.91436 1.21123 0.92526 1.48355 0.93756 0.90915 1.25033 0.95073 0.94724 0.98669 1.69913 1.15755 1.50379 1.18193 0.86782 0.82406 0.78688 0.81406 1.20288 1.21380 1.19146 1.23210 0.93784 0.90401 1.05395 1.21708 0.90461 0.84740 0.74993 1.90720 1.80189 1.19468 1.49838 0.92625 0.90808 0.90892 0.89864 0.89000 0.94551 0.90339 0.91545 0.92660 0.96846 0.97003 0.92734 0.86621 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 11.07 59.85 0.66 1.57 16 2 N -0.65 -7.54 3.37 -183.91 -0.62 -8.16 16 3 C 0.25 2.54 7.25 -61.69 -0.45 2.09 16 4 N -0.50 -6.44 5.51 -237.22 -1.31 -7.75 16 5 C 0.04 0.53 4.68 -3.82 -0.02 0.52 16 6 C -0.10 -1.82 5.26 -26.73 -0.14 -1.96 16 7 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 8 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 9 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 10 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 11 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 12 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 16 C 0.00 0.04 6.47 -3.93 -0.03 0.01 16 17 C 0.49 7.18 8.05 -10.65 -0.09 7.09 16 18 O -0.53 -9.52 17.73 5.56 0.10 -9.42 16 19 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.08 0.75 7.59 -51.93 -0.39 0.35 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.58 7.92 -51.93 -0.41 0.17 16 25 H 0.08 1.11 7.82 -51.93 -0.41 0.70 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.05 1.06 6.94 -51.93 -0.36 0.70 16 28 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.12 1.63 6.62 -51.93 -0.34 1.29 16 32 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 267.44 15.07 4.03 4.03 Total: -1.00 -33.09 267.44 -7.09 -40.18 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -4.80 Total: -4.37 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.60 Total: -4.38 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -1.15 Total: -43.09 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.10 Total: -9.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.09 -7.09 -40.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379395447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.442 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds