Wall clock time and date at job start Mon Mar 30 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46730 * 2 1 4 4 C 1.46809 * 125.20373 * 269.97943 * 3 2 1 5 5 N 1.48344 * 106.16887 * 197.65498 * 4 3 2 6 6 C 1.46900 * 111.04010 * 91.83794 * 5 4 3 7 7 C 1.53005 * 109.46804 * 315.91324 * 6 5 4 8 8 C 1.50701 * 109.47212 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99586 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00073 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99946 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00070 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47078 * 89.99540 * 12 10 8 14 14 H 1.48495 * 109.47161 * 209.99762 * 12 10 8 15 15 H 1.48503 * 109.46781 * 329.99833 * 12 10 8 16 16 C 1.48243 * 103.02039 * 332.95371 * 5 4 3 17 17 C 1.34851 * 125.20649 * 90.02741 * 3 2 1 18 18 O 1.21274 * 125.74968 * 359.51424 * 17 3 2 19 19 H 1.09000 * 109.47414 * 299.99847 * 1 2 3 20 20 H 1.09005 * 109.47156 * 60.00396 * 1 2 3 21 21 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46697 * 240.00358 * 2 1 3 23 23 H 1.08993 * 109.47263 * 120.00027 * 2 1 3 24 24 H 1.08997 * 110.11653 * 316.81132 * 4 3 2 25 25 H 1.08998 * 110.11505 * 78.40154 * 4 3 2 26 26 H 1.09003 * 109.46935 * 75.90361 * 6 5 4 27 27 H 1.08992 * 109.47421 * 195.91257 * 6 5 4 28 28 H 1.09003 * 109.46588 * 299.99249 * 7 6 5 29 29 H 1.08993 * 109.47541 * 59.99381 * 7 6 5 30 30 H 0.97000 * 119.99677 * 180.02562 * 11 10 8 31 31 H 1.09002 * 110.38139 * 267.48876 * 16 5 4 32 32 H 1.09002 * 110.38001 * 145.24566 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3008 2.1791 -1.1996 5 7 3.1571 3.3056 -0.7543 6 6 4.5810 2.9659 -0.8764 7 6 4.8140 1.5483 -0.3500 8 6 6.2749 1.1999 -0.4745 9 1 6.9678 1.9177 -0.8882 10 6 6.7267 -0.0354 -0.0614 11 7 5.8829 -0.9096 0.4418 12 14 8.5375 -0.4675 -0.2165 13 1 9.2496 -0.0683 1.0239 14 1 8.6813 -1.9313 -0.4207 15 1 9.1208 0.2538 -1.3761 16 6 2.7717 3.4766 0.6669 17 6 2.2779 2.1141 1.1018 18 8 2.1387 1.7437 2.2482 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 2.8302 1.5744 -1.9358 25 1 1.3716 2.5584 -1.6249 26 1 4.8785 3.0179 -1.9237 27 1 5.1741 3.6715 -0.2947 28 1 4.5166 1.4962 0.6974 29 1 4.2210 0.8426 -0.9316 30 1 6.2009 -1.7786 0.7328 31 1 1.9757 4.2157 0.7581 32 1 3.6354 3.7748 1.2612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379396231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:19 Heat of formation + Delta-G solvation = -18.800571 kcal Electronic energy + Delta-G solvation = -14844.890310 eV Core-core repulsion = 12419.929036 eV Total energy + Delta-G solvation = -2424.961274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44481 -36.71870 -34.64484 -33.05205 -30.73778 -29.11963 -27.49628 -25.18907 -23.24143 -22.37934 -20.22162 -19.15723 -16.95496 -16.18960 -15.67477 -15.01732 -14.70114 -14.53245 -13.77931 -13.50871 -13.22061 -12.63872 -12.34007 -12.23060 -12.01894 -11.79393 -11.55214 -10.97698 -10.94980 -10.89518 -10.77598 -10.22747 -9.94343 -9.43154 -9.25305 -8.41639 -8.24958 -8.09913 -6.05527 -4.09749 3.06146 3.28225 3.34773 3.37201 3.42991 4.28155 4.42459 4.87865 5.26221 5.30449 5.43238 5.51400 5.56069 5.60968 5.78794 5.84100 6.00011 6.05308 6.17235 6.41073 6.45359 6.66861 6.72123 6.87370 7.25241 7.54795 7.58530 7.69472 7.91672 8.32074 8.64685 8.96485 9.54931 11.04794 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.009991 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.374644 B = 2801.955958 C = 3141.202348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 N -0.629 5.629 4 C 0.253 3.747 5 N -0.507 5.507 6 C 0.035 3.965 7 C -0.006 4.006 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.889 5.889 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.005 3.995 17 C 0.505 3.495 18 O -0.534 6.534 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.017 0.983 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.108 0.892 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.615 4.564 -3.856 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 N -0.365 5.365 4 C 0.041 3.959 5 N -0.230 5.230 6 C -0.092 4.092 7 C -0.044 4.044 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.142 4.142 11 N -0.527 5.527 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.126 4.126 17 C 0.292 3.708 18 O -0.410 6.410 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.791 4.613 -3.531 10.537 hybrid contribution 1.293 -1.183 0.356 1.788 sum -7.498 3.430 -3.176 8.836 Atomic orbital electron populations 1.22174 0.96486 1.01850 1.01872 1.21168 0.92954 0.80898 1.03833 1.48747 1.66014 1.13795 1.07949 1.23013 0.96848 0.87705 0.88334 1.65907 1.07133 1.35351 1.14651 1.22784 0.84854 0.99683 1.01889 1.19794 0.97588 0.90440 0.96615 1.21118 0.93457 0.99886 1.41970 0.92571 1.25011 0.97654 0.96490 0.95055 1.69969 1.34264 1.06814 1.41664 0.86594 0.85412 0.77520 0.78481 1.20651 1.21223 1.19830 1.23067 1.03034 0.95546 0.90981 1.21346 0.76338 0.88247 0.84835 1.90675 1.53992 1.76729 1.19624 0.92633 0.92745 0.91743 0.90349 0.89947 0.89535 0.90201 0.90771 0.91256 0.96458 0.95824 0.92983 0.87375 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.13 2.24 6.76 -4.04 -0.03 2.21 16 3 N -0.63 -11.37 1.95 -175.86 -0.34 -11.71 16 4 C 0.25 4.04 6.50 -61.38 -0.40 3.64 16 5 N -0.51 -8.58 5.85 -236.96 -1.39 -9.97 16 6 C 0.03 0.69 5.31 -3.82 -0.02 0.67 16 7 C -0.01 -0.16 3.61 -27.88 -0.10 -0.26 16 8 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 9 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 12 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.01 0.09 6.49 -3.94 -0.03 0.06 16 17 C 0.51 10.22 6.19 -10.65 -0.07 10.16 16 18 O -0.53 -12.71 17.74 5.56 0.10 -12.61 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.08 1.60 8.02 -51.93 -0.42 1.19 16 24 H 0.09 1.43 6.68 -51.93 -0.35 1.09 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.07 1.36 7.83 -51.93 -0.41 0.95 16 28 H 0.02 0.48 6.15 -51.93 -0.32 0.16 16 29 H 0.02 0.61 5.95 -51.93 -0.31 0.30 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.10 1.80 7.61 -51.93 -0.40 1.41 16 LS Contribution 264.64 15.07 3.99 3.99 Total: -1.00 -32.07 264.64 -7.29 -39.37 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.69 Total: -1.22 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.67 Total: 1.40 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.99 Total: -47.49 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.10 Total: -12.61 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.07 -7.29 -39.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.565 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds