Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46730 * 2 1 4 4 C 1.46809 * 125.20373 * 269.97943 * 3 2 1 5 5 N 1.48344 * 106.16887 * 197.65498 * 4 3 2 6 6 C 1.46900 * 111.04010 * 91.83794 * 5 4 3 7 7 C 1.53005 * 109.46804 * 315.91324 * 6 5 4 8 8 C 1.50701 * 109.47212 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99586 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00073 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99946 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00070 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47078 * 89.99540 * 12 10 8 14 14 H 1.48495 * 109.47161 * 209.99762 * 12 10 8 15 15 H 1.48503 * 109.46781 * 329.99833 * 12 10 8 16 16 C 1.48243 * 103.02039 * 332.95371 * 5 4 3 17 17 C 1.34851 * 125.20649 * 90.02741 * 3 2 1 18 18 O 1.21274 * 125.74968 * 359.51424 * 17 3 2 19 19 H 1.09000 * 109.47414 * 299.99847 * 1 2 3 20 20 H 1.09005 * 109.47156 * 60.00396 * 1 2 3 21 21 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46697 * 240.00358 * 2 1 3 23 23 H 1.08993 * 109.47263 * 120.00027 * 2 1 3 24 24 H 1.08997 * 110.11653 * 316.81132 * 4 3 2 25 25 H 1.08998 * 110.11505 * 78.40154 * 4 3 2 26 26 H 1.09003 * 109.46935 * 75.90361 * 6 5 4 27 27 H 1.08992 * 109.47421 * 195.91257 * 6 5 4 28 28 H 1.09003 * 109.46588 * 299.99249 * 7 6 5 29 29 H 1.08993 * 109.47541 * 59.99381 * 7 6 5 30 30 H 0.97000 * 119.99677 * 180.02562 * 11 10 8 31 31 H 1.09002 * 110.38139 * 267.48876 * 16 5 4 32 32 H 1.09002 * 110.38001 * 145.24566 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3008 2.1791 -1.1996 5 7 3.1571 3.3056 -0.7543 6 6 4.5810 2.9659 -0.8764 7 6 4.8140 1.5483 -0.3500 8 6 6.2749 1.1999 -0.4745 9 1 6.9678 1.9177 -0.8882 10 6 6.7267 -0.0354 -0.0614 11 7 5.8829 -0.9096 0.4418 12 14 8.5375 -0.4675 -0.2165 13 1 9.2496 -0.0683 1.0239 14 1 8.6813 -1.9313 -0.4207 15 1 9.1208 0.2538 -1.3761 16 6 2.7717 3.4766 0.6669 17 6 2.2779 2.1141 1.1018 18 8 2.1387 1.7437 2.2482 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 2.8302 1.5744 -1.9358 25 1 1.3716 2.5584 -1.6249 26 1 4.8785 3.0179 -1.9237 27 1 5.1741 3.6715 -0.2947 28 1 4.5166 1.4962 0.6974 29 1 4.2210 0.8426 -0.9316 30 1 6.2009 -1.7786 0.7328 31 1 1.9757 4.2157 0.7581 32 1 3.6354 3.7748 1.2612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379396231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = -41.708069 kcal Electronic energy + Delta-G solvation = -14845.883654 eV Core-core repulsion = 12419.929036 eV Total energy + Delta-G solvation = -2425.954618 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.93390 -38.35026 -36.14453 -35.05356 -32.38724 -30.67945 -29.00582 -26.92295 -24.83929 -23.88608 -21.86885 -20.67271 -18.85969 -17.67612 -17.37110 -16.62181 -16.46862 -16.21238 -15.17693 -15.07195 -14.55759 -14.47401 -13.90287 -13.79194 -13.66906 -13.21750 -12.88947 -12.80029 -12.73913 -12.58327 -12.12523 -12.04047 -11.74317 -11.33023 -11.10867 -10.58067 -9.73247 -9.64703 -8.22466 -6.34588 1.36821 1.37645 1.48533 1.50822 2.04941 2.36969 2.87858 3.10684 3.45262 3.87786 4.13134 4.17644 4.27017 4.45130 4.53510 4.58394 4.62287 4.75043 4.84476 4.92243 4.97015 5.15586 5.24346 5.35088 5.46810 5.66033 5.70827 5.91089 6.18113 6.23033 6.83028 7.10912 7.35038 8.87393 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.009991 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.374644 B = 2801.955958 C = 3141.202348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 N -0.630 5.630 4 C 0.250 3.750 5 N -0.488 5.488 6 C 0.046 3.954 7 C 0.005 3.995 8 C -0.544 4.544 9 H 0.064 0.936 10 C 0.002 3.998 11 N -0.927 5.927 12 Si 0.961 3.039 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.258 1.258 16 C 0.012 3.988 17 C 0.488 3.512 18 O -0.585 6.585 19 H 0.041 0.959 20 H 0.078 0.922 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.072 0.928 28 H -0.021 1.021 29 H 0.009 0.991 30 H 0.260 0.740 31 H 0.149 0.851 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 5.710 -5.555 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 N -0.365 5.365 4 C 0.039 3.961 5 N -0.211 5.211 6 C -0.081 4.081 7 C -0.033 4.033 8 C -0.582 4.582 9 H 0.082 0.918 10 C -0.196 4.196 11 N -0.567 5.567 12 Si 0.786 3.214 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.182 1.182 16 C -0.119 4.119 17 C 0.276 3.724 18 O -0.465 6.465 19 H 0.060 0.940 20 H 0.097 0.903 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.142 0.858 26 H 0.106 0.894 27 H 0.091 0.909 28 H -0.003 1.003 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.166 0.834 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.912 5.777 -5.281 11.861 hybrid contribution 1.309 -1.568 0.864 2.218 sum -7.603 4.209 -4.416 9.748 Atomic orbital electron populations 1.22036 0.93015 1.03362 1.02308 1.21253 0.95718 0.80311 1.02091 1.48979 1.65048 1.14142 1.08315 1.23327 0.98457 0.87171 0.87147 1.66011 1.05419 1.35202 1.14479 1.22591 0.87019 0.96235 1.02290 1.19628 0.95979 0.93479 0.94240 1.21637 0.95100 1.00093 1.41412 0.91769 1.25939 1.02364 0.96582 0.94745 1.70120 1.36481 1.07222 1.42910 0.85504 0.79738 0.77306 0.78846 1.20442 1.20987 1.18191 1.23185 1.03891 0.94388 0.90461 1.22029 0.75986 0.89781 0.84568 1.90632 1.56305 1.77962 1.21585 0.93969 0.90304 0.89777 0.89786 0.94007 0.90102 0.85756 0.89425 0.90919 1.00268 0.97326 0.93113 0.83381 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 10.24 71.98 0.74 -2.96 16 2 C 0.13 4.37 6.76 86.38 0.58 4.95 16 3 N -0.63 -22.59 1.95 -828.65 -1.62 -24.20 16 4 C 0.25 7.38 6.50 170.13 1.11 8.49 16 5 N -0.49 -15.34 5.85 -903.62 -5.29 -20.63 16 6 C 0.05 1.76 5.31 86.30 0.46 2.22 16 7 C 0.00 0.25 3.61 29.85 0.11 0.35 16 8 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 9 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 10 C 0.00 0.12 5.46 84.65 0.46 0.58 16 11 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 12 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 15 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 16 C 0.01 0.38 6.49 85.49 0.55 0.93 16 17 C 0.49 19.93 6.19 87.84 0.54 20.48 16 18 O -0.58 -29.00 17.74 -3.01 -0.05 -29.05 16 19 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 20 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 23 H 0.04 1.74 8.02 -2.39 -0.02 1.72 16 24 H 0.08 2.53 6.68 -2.39 -0.02 2.51 16 25 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.07 2.73 7.83 -2.39 -0.02 2.71 16 28 H -0.02 -1.22 6.15 -2.39 -0.01 -1.23 16 29 H 0.01 0.45 5.95 -2.39 -0.01 0.43 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.10 3.30 7.61 -2.39 -0.02 3.29 16 Total: -1.00 -71.09 264.64 1.23 -69.86 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.09 Total: 9.04 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.79 Total: 5.10 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -6.62 Total: -101.27 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.05 Total: -29.05 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.09 1.23 -69.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.150 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds