Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47337 * 2 1 4 4 C 1.50697 * 109.47101 * 120.00394 * 2 1 3 5 5 H 1.08007 * 120.00045 * 119.99607 * 4 2 1 6 6 C 1.37875 * 119.99967 * 299.99801 * 4 2 1 7 7 N 1.31512 * 119.99967 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00047 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47246 * 60.00206 * 8 6 4 10 10 H 1.48507 * 109.47106 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47488 * 300.00127 * 8 6 4 12 12 N 1.46504 * 109.47022 * 239.99944 * 2 1 3 13 13 N 1.40103 * 119.99671 * 90.00085 * 12 2 1 14 14 C 1.28008 * 119.99864 * 179.97438 * 13 12 2 15 15 C 1.50704 * 119.99874 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.54205 * 1.16648 * 15 14 13 17 17 C 1.54807 * 110.48840 * 123.78539 * 15 14 13 18 18 C 1.54994 * 102.09860 * 139.55499 * 17 15 14 19 19 O 1.44586 * 103.58334 * 323.05571 * 18 17 15 20 20 C 1.43746 * 106.86832 * 39.87548 * 19 18 17 21 21 H 1.08998 * 109.46792 * 299.99936 * 1 2 3 22 22 H 1.09004 * 109.47248 * 59.99421 * 1 2 3 23 23 H 1.08997 * 109.47231 * 179.97438 * 1 2 3 24 24 H 0.97003 * 120.00201 * 180.02562 * 7 6 4 25 25 H 0.96994 * 120.00292 * 270.00560 * 12 2 1 26 26 H 1.07999 * 120.00534 * 0.02562 * 14 13 12 27 27 H 1.09007 * 110.90637 * 257.75880 * 17 15 14 28 28 H 1.09003 * 110.91046 * 21.31926 * 17 15 14 29 29 H 1.08999 * 110.61668 * 81.47212 * 18 17 15 30 30 H 1.08994 * 110.62187 * 204.31922 * 18 17 15 31 31 H 1.09002 * 109.87826 * 214.17174 * 20 19 18 32 32 H 1.08996 * 109.87812 * 93.17072 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.8063 -1.1212 4.0081 10 1 1.8269 -0.4201 5.2204 11 1 1.8258 -2.5204 4.0076 12 7 2.0183 -0.6906 -1.1962 13 7 2.2518 0.0300 -2.3748 14 6 2.6789 -0.5734 -3.4199 15 6 2.9306 0.2019 -4.6875 16 1 2.7193 1.2605 -4.5367 17 6 4.3903 0.0031 -5.1634 18 6 4.2165 -0.1284 -6.6980 19 8 2.9811 -0.8664 -6.8378 20 6 2.0774 -0.3595 -5.8414 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7088 1.1611 3.4844 25 1 2.1799 -1.6467 -1.1722 26 1 2.8590 -1.6379 -3.3932 27 1 5.0022 0.8700 -4.9140 28 1 4.8170 -0.9064 -4.7404 29 1 4.1283 0.8549 -7.1599 30 1 5.0488 -0.6820 -7.1325 31 1 1.4411 -1.1648 -5.4742 32 1 1.4627 0.4333 -6.2675 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379400655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = -13.109226 kcal Electronic energy + Delta-G solvation = -13695.904927 eV Core-core repulsion = 11271.190448 eV Total energy + Delta-G solvation = -2424.714479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32752 -36.47251 -34.26147 -32.39492 -30.78835 -29.21757 -26.93375 -25.20910 -22.98714 -21.95319 -20.23487 -19.74458 -17.20250 -16.34783 -15.94752 -15.43842 -15.05370 -14.81343 -13.81751 -13.20415 -12.85948 -12.55111 -12.40662 -11.95699 -11.53063 -11.38978 -11.21471 -11.00186 -10.81100 -10.77060 -10.38189 -10.21229 -10.16388 -9.68114 -9.42524 -8.99681 -8.50833 -6.94193 -6.12888 -4.21033 2.94227 3.25639 3.30262 3.31992 3.83154 3.96844 4.36785 4.73423 4.95301 5.03721 5.19327 5.22131 5.27892 5.45500 5.66804 5.75537 5.82151 6.00493 6.15111 6.33583 6.74480 6.85328 6.99727 7.01279 7.17955 7.58951 7.80125 7.88630 8.18589 8.34837 8.87483 9.42057 9.46195 10.93051 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.066728 B = 0.005255 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.516326 B = 5327.379931 C = 5533.399404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.637 5.637 13 N -0.208 5.208 14 C -0.033 4.033 15 C -0.052 4.052 16 H 0.093 0.907 17 C -0.145 4.145 18 C 0.046 3.954 19 O -0.382 6.382 20 C 0.056 3.944 21 H 0.089 0.911 22 H 0.011 0.989 23 H 0.025 0.975 24 H 0.265 0.735 25 H 0.367 0.633 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 -1.381 -13.221 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.196 3.804 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.374 5.374 13 N -0.018 5.018 14 C -0.247 4.247 15 C -0.073 4.073 16 H 0.111 0.889 17 C -0.184 4.184 18 C -0.031 4.031 19 O -0.301 6.301 20 C -0.022 4.022 21 H 0.107 0.893 22 H 0.030 0.970 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.203 0.797 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.744 -0.418 -12.664 13.212 hybrid contribution 0.567 -1.520 0.948 1.879 sum 4.311 -1.937 -11.716 12.634 Atomic orbital electron populations 1.22204 0.99217 0.99087 1.00411 1.18463 0.90014 0.93424 0.78456 0.94278 1.21213 1.32192 1.13231 0.90312 0.92352 1.24859 0.94843 0.95010 0.98930 1.69882 1.36029 1.22568 1.23973 0.86488 0.79156 0.79610 0.81726 1.20211 1.21064 1.20183 1.48960 1.74075 1.07513 1.06841 1.73291 1.05073 1.28999 0.94407 1.24809 1.09088 0.97099 0.93700 1.21087 0.94482 1.00240 0.91526 0.88905 1.23166 0.96589 1.03346 0.95276 1.23579 0.87459 0.96440 0.95618 1.88894 1.24677 1.60800 1.55759 1.23217 0.92485 0.99121 0.87411 0.89258 0.96965 0.95618 0.92534 0.79745 0.89127 0.90020 0.90226 0.92264 0.89185 0.89594 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.29 37.16 0.35 -3.41 16 2 C 0.30 7.77 3.23 -69.08 -0.22 7.55 16 3 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.53 -14.45 8.74 -34.44 -0.30 -14.76 16 5 H 0.06 1.56 7.79 -52.48 -0.41 1.15 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.64 -14.45 6.09 -5.88 -0.04 -14.49 16 13 N -0.21 -4.29 11.40 32.67 0.37 -3.92 16 14 C -0.03 -0.55 9.37 -13.87 -0.13 -0.68 16 15 C -0.05 -0.69 3.51 -90.24 -0.32 -1.01 16 16 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 17 C -0.14 -1.59 6.70 -24.73 -0.17 -1.76 16 18 C 0.05 0.46 7.72 38.21 0.29 0.75 16 19 O -0.38 -4.94 11.54 -35.23 -0.41 -5.35 16 20 C 0.06 0.68 7.35 37.73 0.28 0.96 16 21 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.37 7.78 8.56 -182.60 -1.56 6.22 16 26 H 0.09 1.43 8.00 -52.49 -0.42 1.01 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -29.03 271.82 -6.71 -35.74 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.03 Total: 2.96 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.31 Total: -10.64 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.96 Total: -42.70 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.41 Total: -5.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.03 -6.71 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.628 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds