Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27976 * 119.99692 * 2 1 4 4 O 1.21796 * 120.00437 * 359.97438 * 3 2 1 5 5 C 1.34776 * 116.99983 * 180.02562 * 4 3 2 6 6 H 1.07991 * 120.00137 * 0.02562 * 5 4 3 7 7 C 1.38699 * 119.99515 * 180.02562 * 5 4 3 8 8 N 1.31541 * 120.00517 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99670 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00230 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00223 * 9 7 5 13 13 C 1.50701 * 120.00092 * 179.97438 * 2 1 3 14 14 H 1.08996 * 110.43775 * 307.54675 * 13 2 1 15 15 C 1.54888 * 110.48421 * 70.23100 * 13 2 1 16 16 C 1.54889 * 102.74994 * 156.62159 * 15 13 2 17 17 C 1.54261 * 104.19239 * 322.05289 * 16 15 13 18 18 H 1.09005 * 110.07021 * 142.91649 * 17 16 15 19 19 N 1.46897 * 110.03886 * 264.32381 * 17 16 15 20 20 C 1.53876 * 106.60004 * 23.61723 * 17 16 15 21 21 H 1.09005 * 109.47148 * 90.00497 * 1 2 3 22 22 H 1.09005 * 109.47601 * 210.00247 * 1 2 3 23 23 H 1.08998 * 109.47484 * 330.00779 * 1 2 3 24 24 H 0.97004 * 119.99359 * 359.97438 * 8 7 5 25 25 H 1.09001 * 110.75677 * 274.93452 * 15 13 2 26 26 H 1.09005 * 110.76091 * 38.30214 * 15 13 2 27 27 H 1.08999 * 110.48702 * 203.37904 * 16 15 13 28 28 H 1.09000 * 110.59977 * 80.79004 * 16 15 13 29 29 H 1.00903 * 111.00269 * 297.17432 * 19 17 16 30 30 H 1.00904 * 110.99568 * 61.11935 * 19 17 16 31 31 H 1.09004 * 110.02935 * 240.71025 * 20 17 16 32 32 H 1.08991 * 110.03767 * 119.28217 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1468 1.1083 0.0000 4 8 1.5378 2.1631 -0.0005 5 6 2.2719 3.2934 -0.0010 6 1 3.3503 3.2369 -0.0014 7 6 1.6422 4.5292 -0.0010 8 7 0.3286 4.5981 0.0000 9 14 2.6595 6.0958 -0.0024 10 1 1.7549 7.2736 -0.0016 11 1 3.5153 6.1293 -1.2156 12 1 3.5172 6.1303 1.2094 13 6 2.2605 -1.3051 0.0006 14 1 1.9118 -1.9456 0.8107 15 6 2.1065 -2.0205 -1.3645 16 6 3.3527 -2.9391 -1.4115 17 6 4.4716 -2.0917 -0.7714 18 1 5.1249 -2.7260 -0.1721 19 7 5.2499 -1.4135 -1.8165 20 6 3.7772 -1.0528 0.1265 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 -0.1997 3.7845 0.0004 25 1 1.1905 -2.6107 -1.3902 26 1 2.1263 -1.3003 -2.1826 27 1 3.6048 -3.1876 -2.4425 28 1 3.1824 -3.8465 -0.8321 29 1 5.7120 -2.0821 -2.4145 30 1 4.6667 -0.7899 -2.3543 31 1 4.0176 -0.0454 -0.2133 32 1 4.0927 -1.1834 1.1616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381989217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = 4.313710 kcal Electronic energy + Delta-G solvation = -14346.073090 eV Core-core repulsion = 11922.114126 eV Total energy + Delta-G solvation = -2423.958964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.10094 -38.38985 -34.28942 -32.50359 -31.02883 -28.40846 -27.55092 -26.08492 -24.25972 -21.25850 -19.71269 -19.30667 -18.11543 -16.14153 -15.61394 -15.22663 -14.92924 -14.64927 -14.14160 -13.80149 -13.15429 -13.10729 -12.32292 -12.03080 -11.64271 -11.44452 -11.09031 -10.91436 -10.80218 -10.71863 -10.36845 -10.27597 -10.20395 -9.90614 -8.97251 -8.51930 -8.16383 -7.67060 -6.71184 -4.00418 3.24191 3.29798 3.50732 3.52089 4.14848 4.66248 4.78887 4.90018 5.16593 5.18454 5.23182 5.57177 5.72112 5.76572 5.85872 5.93174 5.96798 6.10242 6.12086 6.33338 6.35783 6.42133 6.51782 6.63718 6.89684 7.16462 7.37115 7.60695 7.64064 8.20383 8.71021 9.07504 10.36005 10.80670 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039787 B = 0.007882 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.573164 B = 3551.651088 C = 4071.184018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 N -0.334 5.334 4 O -0.004 6.004 5 C -0.457 4.457 6 H 0.079 0.921 7 C 0.009 3.991 8 N -0.889 5.889 9 Si 1.101 2.899 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.282 1.282 13 C -0.004 4.004 14 H 0.071 0.929 15 C -0.112 4.112 16 C -0.159 4.159 17 C 0.087 3.913 18 H 0.074 0.926 19 N -0.842 5.842 20 C -0.115 4.115 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.278 0.722 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.332 0.668 30 H 0.344 0.656 31 H 0.097 0.903 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -11.489 -2.279 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.245 4.245 3 N -0.047 5.047 4 O -0.068 6.068 5 C -0.535 4.535 6 H 0.097 0.903 7 C -0.196 4.196 8 N -0.523 5.523 9 Si 0.925 3.075 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.023 4.023 14 H 0.089 0.911 15 C -0.150 4.150 16 C -0.199 4.199 17 C -0.025 4.025 18 H 0.093 0.907 19 N -0.371 5.371 20 C -0.153 4.153 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.157 0.843 31 H 0.116 0.884 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.424 -9.333 -1.658 10.921 hybrid contribution -1.334 -2.452 -0.661 2.868 sum 4.089 -11.785 -2.318 12.688 Atomic orbital electron populations 1.20756 0.94572 1.01310 1.00780 1.23149 0.92347 0.91673 1.17357 1.69480 1.35050 0.93185 1.07011 1.83073 1.35925 1.09552 1.78236 1.22298 0.92228 0.81612 1.57370 0.90303 1.26540 0.97839 0.99935 0.95253 1.70591 1.04827 1.32878 1.43993 0.83033 0.73963 0.73383 0.77073 1.19926 1.20821 1.20834 1.20287 0.94042 0.91649 0.96349 0.91069 1.22496 0.96955 0.97615 0.97979 1.23227 0.97452 0.98956 1.00220 1.22098 0.92774 0.94320 0.93304 0.90742 1.58962 1.35692 1.23500 1.18905 1.22226 0.93375 1.01034 0.98686 0.93189 0.93197 0.92276 0.91186 0.91940 0.91666 0.92322 0.91573 0.85606 0.84313 0.88416 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 9.69 36.00 0.35 -1.96 16 2 C -0.07 -1.50 6.39 -78.93 -0.50 -2.00 16 3 N -0.33 -8.55 8.61 35.59 0.31 -8.25 16 4 O 0.00 -0.11 8.05 14.93 0.12 0.01 16 5 C -0.46 -13.39 10.14 30.90 0.31 -13.08 16 6 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 7 C 0.01 0.26 5.49 -17.51 -0.10 0.17 16 8 N -0.89 -26.76 13.70 55.48 0.76 -26.00 16 9 Si 1.10 24.37 29.92 -169.99 -5.09 19.29 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.00 -0.06 3.18 -90.11 -0.29 -0.35 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.11 -1.62 6.27 -24.74 -0.16 -1.77 16 16 C -0.16 -1.92 6.52 -25.07 -0.16 -2.09 16 17 C 0.09 1.19 4.04 -66.60 -0.27 0.92 16 18 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 19 N -0.84 -11.40 9.11 -3.72 -0.03 -11.44 16 20 C -0.12 -1.96 5.94 -25.61 -0.15 -2.11 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 23 H 0.06 1.32 7.40 -51.93 -0.38 0.94 16 24 H 0.28 8.53 7.97 -40.82 -0.33 8.21 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 27 H 0.06 0.64 8.03 -51.93 -0.42 0.23 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.33 3.61 9.06 -39.29 -0.36 3.26 16 30 H 0.34 4.94 8.97 -39.29 -0.35 4.59 16 31 H 0.10 2.01 6.41 -51.93 -0.33 1.68 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -30.82 269.07 -5.59 -36.41 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.75 Total: 8.20 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -0.96 Total: -22.28 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 1.03 Total: -45.68 kcal Atomic # 8 Polarization: -0.11 SS G_CDS: 0.12 Total: 0.01 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.09 Total: 19.29 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.82 -5.59 -36.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381989217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.724 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds