Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27976 * 119.99692 * 2 1 4 4 O 1.21796 * 120.00437 * 359.97438 * 3 2 1 5 5 C 1.34776 * 116.99983 * 180.02562 * 4 3 2 6 6 H 1.07991 * 120.00137 * 0.02562 * 5 4 3 7 7 C 1.38699 * 119.99515 * 180.02562 * 5 4 3 8 8 N 1.31541 * 120.00517 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99670 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00230 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00223 * 9 7 5 13 13 C 1.50701 * 120.00092 * 179.97438 * 2 1 3 14 14 H 1.08996 * 110.43775 * 307.54675 * 13 2 1 15 15 C 1.54888 * 110.48421 * 70.23100 * 13 2 1 16 16 C 1.54889 * 102.74994 * 156.62159 * 15 13 2 17 17 C 1.54261 * 104.19239 * 322.05289 * 16 15 13 18 18 H 1.09005 * 110.07021 * 142.91649 * 17 16 15 19 19 N 1.46897 * 110.03886 * 264.32381 * 17 16 15 20 20 C 1.53876 * 106.60004 * 23.61723 * 17 16 15 21 21 H 1.09005 * 109.47148 * 90.00497 * 1 2 3 22 22 H 1.09005 * 109.47601 * 210.00247 * 1 2 3 23 23 H 1.08998 * 109.47484 * 330.00779 * 1 2 3 24 24 H 0.97004 * 119.99359 * 359.97438 * 8 7 5 25 25 H 1.09001 * 110.75677 * 274.93452 * 15 13 2 26 26 H 1.09005 * 110.76091 * 38.30214 * 15 13 2 27 27 H 1.08999 * 110.48702 * 203.37904 * 16 15 13 28 28 H 1.09000 * 110.59977 * 80.79004 * 16 15 13 29 29 H 1.00903 * 111.00269 * 297.17432 * 19 17 16 30 30 H 1.00904 * 110.99568 * 61.11935 * 19 17 16 31 31 H 1.09004 * 110.02935 * 240.71025 * 20 17 16 32 32 H 1.08991 * 110.03767 * 119.28217 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1468 1.1083 0.0000 4 8 1.5378 2.1631 -0.0005 5 6 2.2719 3.2934 -0.0010 6 1 3.3503 3.2369 -0.0014 7 6 1.6422 4.5292 -0.0010 8 7 0.3286 4.5981 0.0000 9 14 2.6595 6.0958 -0.0024 10 1 1.7549 7.2736 -0.0016 11 1 3.5153 6.1293 -1.2156 12 1 3.5172 6.1303 1.2094 13 6 2.2605 -1.3051 0.0006 14 1 1.9118 -1.9456 0.8107 15 6 2.1065 -2.0205 -1.3645 16 6 3.3527 -2.9391 -1.4115 17 6 4.4716 -2.0917 -0.7714 18 1 5.1249 -2.7260 -0.1721 19 7 5.2499 -1.4135 -1.8165 20 6 3.7772 -1.0528 0.1265 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 -0.1997 3.7845 0.0004 25 1 1.1905 -2.6107 -1.3902 26 1 2.1263 -1.3003 -2.1826 27 1 3.6048 -3.1876 -2.4425 28 1 3.1824 -3.8465 -0.8321 29 1 5.7120 -2.0821 -2.4145 30 1 4.6667 -0.7899 -2.3543 31 1 4.0176 -0.0454 -0.2133 32 1 4.0927 -1.1834 1.1616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381989217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = -17.572524 kcal Electronic energy + Delta-G solvation = -14347.022148 eV Core-core repulsion = 11922.114126 eV Total energy + Delta-G solvation = -2424.908022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.97931 -39.66248 -36.03098 -34.35773 -32.47338 -29.76045 -29.28619 -27.37357 -26.31885 -22.77222 -21.00016 -20.82986 -20.12130 -17.44234 -17.23526 -17.04643 -16.77670 -15.94013 -15.56060 -15.49998 -14.59797 -14.35475 -13.91964 -13.81997 -13.27121 -12.76216 -12.66246 -12.28143 -12.20824 -12.04426 -11.91068 -11.86202 -11.65804 -11.49762 -10.98057 -10.05580 -9.69141 -9.53858 -8.96950 -6.25985 1.47101 1.49463 1.73283 1.81182 2.32992 3.01514 3.11123 3.53558 3.71675 3.86607 4.05890 4.23588 4.40534 4.55779 4.57199 4.63518 4.66733 4.72274 4.80465 4.85499 5.04917 5.07350 5.27113 5.33210 5.34037 5.47934 5.60252 6.07044 6.27784 6.63839 6.67109 6.93362 8.25578 8.62406 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039787 B = 0.007882 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.573164 B = 3551.651088 C = 4071.184018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.021 4.021 3 N -0.371 5.371 4 O -0.063 6.063 5 C -0.475 4.475 6 H 0.070 0.930 7 C -0.038 4.038 8 N -0.917 5.917 9 Si 1.149 2.851 10 H -0.269 1.269 11 H -0.263 1.263 12 H -0.264 1.264 13 C -0.012 4.012 14 H 0.101 0.899 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.091 3.909 18 H 0.091 0.909 19 N -0.853 5.853 20 C -0.118 4.118 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.027 0.973 24 H 0.259 0.741 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.349 0.651 30 H 0.336 0.664 31 H 0.057 0.943 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.168 -14.013 -2.550 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.201 4.201 3 N -0.094 5.094 4 O -0.113 6.113 5 C -0.552 4.552 6 H 0.088 0.912 7 C -0.235 4.235 8 N -0.553 5.553 9 Si 0.965 3.035 10 H -0.193 1.193 11 H -0.188 1.188 12 H -0.188 1.188 13 C -0.032 4.032 14 H 0.119 0.881 15 C -0.145 4.145 16 C -0.184 4.184 17 C -0.021 4.021 18 H 0.109 0.891 19 N -0.383 5.383 20 C -0.157 4.157 21 H 0.079 0.921 22 H 0.112 0.888 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.075 0.925 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.187 -11.797 -1.933 13.461 hybrid contribution -1.588 -2.047 -0.566 2.652 sum 4.599 -13.845 -2.500 14.801 Atomic orbital electron populations 1.20877 0.93526 1.01875 1.01690 1.24429 0.93921 0.92528 1.09271 1.69567 1.36032 0.93341 1.10463 1.83088 1.35941 1.10157 1.82149 1.22541 0.92088 0.82869 1.57714 0.91168 1.28360 0.98116 1.03142 0.93883 1.70723 1.05742 1.31544 1.47242 0.82536 0.73057 0.69365 0.78578 1.19335 1.18771 1.18845 1.20635 0.93608 0.89558 0.99357 0.88075 1.22448 0.99533 0.97573 0.94974 1.23149 0.94922 0.98746 1.01567 1.22059 0.93505 0.93469 0.93032 0.89081 1.58912 1.35872 1.24205 1.19333 1.22204 0.93912 1.00032 0.99532 0.92058 0.88803 0.95428 0.93266 0.89603 0.93822 0.90646 0.89076 0.83727 0.85132 0.92472 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 9.69 71.24 0.69 -4.01 16 2 C -0.02 -0.90 6.39 46.54 0.30 -0.60 16 3 N -0.37 -19.62 8.61 -41.22 -0.35 -19.98 16 4 O -0.06 -3.86 8.05 63.34 0.51 -3.35 16 5 C -0.47 -29.28 10.14 67.93 0.69 -28.59 16 6 H 0.07 4.27 7.83 -2.92 -0.02 4.25 16 7 C -0.04 -2.26 5.49 84.85 0.47 -1.79 16 8 N -0.92 -57.70 13.70 21.62 0.30 -57.41 16 9 Si 1.15 49.80 29.92 68.60 2.05 51.86 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 12 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 13 C -0.01 -0.38 3.18 -10.47 -0.03 -0.42 16 14 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 15 C -0.11 -2.69 6.27 31.88 0.20 -2.49 16 16 C -0.14 -2.83 6.52 31.67 0.21 -2.62 16 17 C 0.09 2.21 4.04 45.64 0.18 2.40 16 18 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 19 N -0.85 -21.54 9.11 -165.68 -1.51 -23.05 16 20 C -0.12 -3.86 5.94 31.32 0.19 -3.67 16 21 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 22 H 0.09 2.83 8.12 -2.38 -0.02 2.81 16 23 H 0.03 1.25 7.40 -2.39 -0.02 1.23 16 24 H 0.26 16.89 7.97 -92.70 -0.74 16.15 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.04 1.29 8.05 -2.38 -0.02 1.27 16 27 H 0.07 1.29 8.03 -2.39 -0.02 1.27 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.35 6.67 9.06 -89.69 -0.81 5.86 16 30 H 0.34 9.40 8.97 -89.69 -0.80 8.60 16 31 H 0.06 2.38 6.41 -2.38 -0.02 2.36 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -71.58 269.07 3.41 -68.17 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.47 Total: 25.56 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 2.89 Total: -41.80 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -1.57 Total: -100.44 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.51 Total: -3.35 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.86 kcal Total: -71.58 3.41 -68.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381989217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.595 kcal (2) G-P(sol) polarization free energy of solvation -71.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds