Wall clock time and date at job start Mon Mar 30 2020 02:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27978 * 119.99644 * 2 1 4 4 O 1.21800 * 120.00055 * 0.02562 * 3 2 1 5 5 C 1.34771 * 117.00113 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99768 * 359.97438 * 5 4 3 7 7 C 1.38695 * 120.00336 * 180.02562 * 5 4 3 8 8 N 1.31535 * 119.99669 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00136 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46821 * 90.00332 * 9 7 5 11 11 H 1.48502 * 109.46979 * 209.99815 * 9 7 5 12 12 H 1.48499 * 109.46879 * 329.99982 * 9 7 5 13 13 C 1.50699 * 120.00487 * 179.97438 * 2 1 3 14 14 H 1.09001 * 110.53226 * 52.38795 * 13 2 1 15 15 C 1.54883 * 110.48739 * 289.78079 * 13 2 1 16 16 C 1.54968 * 102.77558 * 203.40213 * 15 13 2 17 17 C 1.54265 * 104.15902 * 37.88754 * 16 15 13 18 18 H 1.08995 * 110.03486 * 95.75653 * 17 16 15 19 19 N 1.46905 * 110.02933 * 217.13562 * 17 16 15 20 20 C 1.53875 * 106.64085 * 336.44300 * 17 16 15 21 21 H 1.08999 * 109.46697 * 269.99909 * 1 2 3 22 22 H 1.08994 * 109.46972 * 30.00103 * 1 2 3 23 23 H 1.09001 * 109.46743 * 149.99906 * 1 2 3 24 24 H 0.97012 * 119.99949 * 179.97438 * 8 7 5 25 25 H 1.09010 * 110.75400 * 321.68886 * 15 13 2 26 26 H 1.08994 * 110.76380 * 84.87426 * 15 13 2 27 27 H 1.08997 * 110.47528 * 279.23116 * 16 15 13 28 28 H 1.09000 * 110.52617 * 156.56387 * 16 15 13 29 29 H 1.00901 * 110.99869 * 297.90927 * 19 17 16 30 30 H 1.00896 * 110.99543 * 61.86050 * 19 17 16 31 31 H 1.08996 * 110.03198 * 119.26280 * 20 17 16 32 32 H 1.09000 * 110.03265 * 240.64590 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1469 1.1084 0.0000 4 8 1.5378 2.1632 0.0005 5 6 2.2718 3.2935 0.0010 6 1 3.3503 3.2370 0.0014 7 6 1.6421 4.5293 0.0021 8 7 0.3285 4.5980 0.0021 9 14 2.6594 6.0960 0.0035 10 1 2.9289 6.5124 -1.3962 11 1 1.9120 7.1708 0.7044 12 1 3.9459 5.8501 0.7033 13 6 2.2607 -1.3050 0.0006 14 1 1.9123 -1.9480 -0.8077 15 6 2.1065 -2.0194 1.3662 16 6 3.3536 -2.9381 1.4150 17 6 4.4717 -2.0909 0.7732 18 1 5.0498 -1.5872 1.5478 19 7 5.3513 -2.9471 -0.0339 20 6 3.7773 -1.0528 -0.1255 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 -0.1120 5.4624 0.0032 25 1 2.1263 -1.2985 2.1836 26 1 1.1889 -2.6069 1.3935 27 1 3.1819 -3.8452 0.8355 28 1 3.6062 -3.1850 2.4461 29 1 5.8061 -3.6414 0.5400 30 1 4.8409 -3.3800 -0.7889 31 1 4.0176 -0.0451 0.2135 32 1 4.0936 -1.1836 -1.1604 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381989220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:09 Heat of formation + Delta-G solvation = -11.814792 kcal Electronic energy + Delta-G solvation = -14212.903629 eV Core-core repulsion = 11788.245281 eV Total energy + Delta-G solvation = -2424.658348 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81094 -39.56193 -35.88288 -34.33199 -32.58466 -29.66398 -29.41946 -27.14256 -26.58199 -22.56491 -21.10646 -20.58406 -20.03651 -17.36979 -17.16916 -16.75680 -16.55194 -16.12830 -16.00404 -14.87824 -14.47320 -14.28766 -13.81010 -13.61010 -13.43337 -13.11466 -12.80690 -12.57406 -12.22099 -12.06322 -11.99083 -11.80683 -11.60451 -11.53076 -11.01444 -9.93685 -9.58780 -9.48999 -8.46368 -6.15758 1.35770 1.38366 1.53765 1.74226 2.17716 3.01170 3.26364 3.64282 3.76981 3.83147 4.07974 4.40324 4.52039 4.56704 4.63160 4.68333 4.74474 4.78519 4.84090 4.93750 5.09256 5.12346 5.14421 5.39009 5.42424 5.54536 5.65180 6.00499 6.34277 6.68612 6.73262 7.04617 8.46202 8.85078 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.007281 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.602623 B = 3844.949066 C = 4319.853789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.023 4.023 3 N -0.380 5.380 4 O -0.044 6.044 5 C -0.403 4.403 6 H 0.081 0.919 7 C -0.018 4.018 8 N -0.921 5.921 9 Si 1.024 2.976 10 H -0.263 1.263 11 H -0.267 1.267 12 H -0.260 1.260 13 C -0.010 4.010 14 H 0.099 0.901 15 C -0.106 4.106 16 C -0.142 4.142 17 C 0.092 3.908 18 H 0.067 0.933 19 N -0.848 5.848 20 C -0.112 4.112 21 H 0.058 0.942 22 H 0.027 0.973 23 H 0.090 0.910 24 H 0.274 0.726 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.349 0.651 30 H 0.347 0.653 31 H 0.049 0.951 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -13.801 1.648 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.203 4.203 3 N -0.102 5.102 4 O -0.095 6.095 5 C -0.480 4.480 6 H 0.099 0.901 7 C -0.216 4.216 8 N -0.560 5.560 9 Si 0.843 3.157 10 H -0.188 1.188 11 H -0.191 1.191 12 H -0.184 1.184 13 C -0.030 4.030 14 H 0.117 0.883 15 C -0.146 4.146 16 C -0.182 4.182 17 C -0.020 4.020 18 H 0.086 0.914 19 N -0.379 5.379 20 C -0.150 4.150 21 H 0.077 0.923 22 H 0.047 0.953 23 H 0.109 0.891 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.068 0.932 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.819 -12.746 1.478 14.089 hybrid contribution -1.280 0.231 0.271 1.328 sum 4.540 -12.514 1.749 13.427 Atomic orbital electron populations 1.20837 0.93612 1.01723 1.01545 1.24320 0.93825 0.92421 1.09687 1.69454 1.36462 0.93872 1.10382 1.83403 1.35185 1.09554 1.81368 1.21743 0.91114 0.81305 1.53842 0.90092 1.26492 0.97616 1.01605 0.95887 1.70157 1.09535 1.27012 1.49345 0.84522 0.77281 0.74632 0.79228 1.18789 1.19118 1.18352 1.20588 0.93471 0.89715 0.99191 0.88284 1.22439 0.99240 0.97666 0.95208 1.23149 0.94796 0.98283 1.01946 1.21961 0.92343 0.93473 0.94202 0.91426 1.58857 1.35376 1.28383 1.15264 1.22106 0.93968 0.99038 0.99923 0.92280 0.95348 0.89075 0.91704 0.93573 0.89585 0.89574 0.90520 0.83668 0.83926 0.93182 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.69 71.24 0.69 -4.10 16 2 C -0.02 -0.98 6.39 46.54 0.30 -0.68 16 3 N -0.38 -20.35 8.61 -41.21 -0.35 -20.70 16 4 O -0.04 -2.73 8.65 63.37 0.55 -2.19 16 5 C -0.40 -24.73 10.14 67.93 0.69 -24.04 16 6 H 0.08 4.82 7.83 -2.91 -0.02 4.80 16 7 C -0.02 -1.04 5.49 84.85 0.47 -0.57 16 8 N -0.92 -56.72 13.67 21.62 0.30 -56.42 16 9 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 10 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 C -0.01 -0.33 3.18 -10.47 -0.03 -0.36 16 14 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 15 C -0.11 -2.77 6.27 31.91 0.20 -2.57 16 16 C -0.14 -2.88 6.52 31.70 0.21 -2.67 16 17 C 0.09 2.31 4.04 45.64 0.18 2.50 16 18 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 19 N -0.85 -17.40 9.13 -165.67 -1.51 -18.91 16 20 C -0.11 -3.70 5.94 31.32 0.19 -3.52 16 21 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.03 1.35 7.40 -2.39 -0.02 1.33 16 23 H 0.09 2.86 8.12 -2.39 -0.02 2.84 16 24 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 25 H 0.05 1.42 8.05 -2.38 -0.02 1.40 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 1.37 8.02 -2.39 -0.02 1.35 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.35 5.48 9.06 -89.69 -0.81 4.67 16 30 H 0.35 6.17 8.93 -89.70 -0.80 5.37 16 31 H 0.05 2.08 6.65 -2.39 -0.02 2.06 16 32 H 0.06 2.04 7.90 -2.39 -0.02 2.02 16 Total: -1.00 -71.10 269.58 3.40 -67.70 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.49 Total: 20.19 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 2.89 Total: -36.02 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -1.57 Total: -96.03 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: 0.55 Total: -2.19 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.10 3.40 -67.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381989220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.884 kcal (2) G-P(sol) polarization free energy of solvation -71.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds