Wall clock time and date at job start Mon Mar 30 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46847 * 2 1 4 4 N 1.46898 * 109.47095 * 240.00220 * 2 1 3 5 5 C 1.46904 * 111.00018 * 85.00025 * 4 2 1 6 6 C 1.53001 * 117.51936 * 136.28321 * 5 4 2 7 7 C 1.52999 * 60.00190 * 107.47915 * 6 5 4 8 8 C 1.50702 * 109.47318 * 120.00241 * 2 1 3 9 9 O 1.21280 * 119.99872 * 120.00070 * 8 2 1 10 10 N 1.34778 * 119.99926 * 300.00072 * 8 2 1 11 11 C 1.46494 * 119.99920 * 180.02562 * 10 8 2 12 12 C 1.50710 * 109.46963 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99600 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00304 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99689 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47110 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46905 * 120.00493 * 16 14 12 19 19 H 1.48496 * 109.46934 * 240.00736 * 16 14 12 20 20 H 1.09001 * 109.47083 * 299.99596 * 1 2 3 21 21 H 1.09000 * 109.47392 * 60.00238 * 1 2 3 22 22 H 1.08999 * 109.46847 * 179.97438 * 1 2 3 23 23 H 1.00897 * 111.00673 * 321.04495 * 4 2 1 24 24 H 1.09002 * 115.55029 * 350.58057 * 5 4 2 25 25 H 1.09001 * 117.49733 * 214.97346 * 6 5 4 26 26 H 1.08995 * 117.49577 * 359.97438 * 6 5 4 27 27 H 1.09004 * 117.50150 * 252.51496 * 7 6 5 28 28 H 1.09004 * 117.49681 * 107.48417 * 7 6 5 29 29 H 0.97003 * 119.99576 * 359.97438 * 10 8 2 30 30 H 1.09006 * 109.47268 * 299.99577 * 11 10 8 31 31 H 1.08994 * 109.47551 * 60.00389 * 11 10 8 32 32 H 0.97007 * 120.00034 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0824 0.2227 -2.3469 6 6 3.3275 0.1599 -3.2340 7 6 1.9950 -0.3911 -3.7457 8 6 2.0324 -0.7105 1.2304 9 8 2.7297 -1.6965 1.1191 10 7 1.7068 -0.2500 2.4546 11 6 2.1956 -0.9403 3.6507 12 6 1.6926 -0.2304 4.8812 13 1 1.0707 0.6470 4.7821 14 6 2.0256 -0.7016 6.1334 15 7 2.7826 -1.7703 6.2540 16 14 1.4028 0.1788 7.6587 17 1 0.5772 1.3452 7.2546 18 1 0.5778 -0.7548 8.4669 19 1 2.5577 0.6456 8.4671 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.4496 -1.4979 -1.4101 24 1 1.6209 1.1986 -2.1958 25 1 3.6851 1.0944 -3.6663 26 1 4.1005 -0.5603 -2.9660 27 1 1.8913 -1.4740 -3.8145 28 1 1.4759 0.1810 -4.5147 29 1 1.1494 0.5388 2.5435 30 1 1.8327 -1.9682 3.6508 31 1 3.2855 -0.9398 3.6506 32 1 3.0171 -2.1016 7.1351 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383029505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:04 Heat of formation + Delta-G solvation = -17.859641 kcal Electronic energy + Delta-G solvation = -13790.498054 eV Core-core repulsion = 11365.577582 eV Total energy + Delta-G solvation = -2424.920472 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.15655 -37.52190 -34.23837 -34.03568 -32.24777 -28.94379 -27.09092 -24.10757 -22.45012 -22.11117 -21.12041 -19.44772 -17.20778 -16.34235 -15.80674 -15.19550 -14.83766 -14.30146 -14.13111 -13.66832 -13.30093 -12.91335 -12.39856 -12.03187 -11.95785 -11.72488 -11.54510 -11.20965 -10.93263 -10.88955 -10.83129 -10.42253 -10.29179 -9.35012 -8.92781 -8.70804 -8.15475 -7.80438 -6.14484 -4.21236 3.24512 3.31400 3.34433 3.47343 3.73429 3.77053 4.30436 4.49053 4.85225 4.91479 5.05796 5.14540 5.21622 5.25404 5.36999 5.53176 5.55955 5.77221 5.81054 5.91126 6.09484 6.14979 7.02095 7.35599 7.39639 7.51417 7.56557 7.71689 8.00315 8.69703 8.83448 9.20231 9.45947 10.95796 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.071873 B = 0.005442 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.479907 B = 5144.363312 C = 5330.436307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 H 0.099 0.901 4 N -0.635 5.635 5 C 0.019 3.981 6 C -0.171 4.171 7 C -0.195 4.195 8 C 0.502 3.498 9 O -0.537 6.537 10 N -0.715 5.715 11 C 0.250 3.750 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.349 0.651 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.388 0.612 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 6.058 -14.937 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.045 4.045 3 H 0.117 0.883 4 N -0.265 5.265 5 C -0.092 4.092 6 C -0.209 4.209 7 C -0.233 4.233 8 C 0.286 3.714 9 O -0.414 6.414 10 N -0.365 5.365 11 C 0.130 3.870 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.169 0.831 24 H 0.117 0.883 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.220 0.780 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.690 5.265 -14.668 16.015 hybrid contribution -1.469 0.894 0.748 1.876 sum -5.159 6.159 -13.920 16.072 Atomic orbital electron populations 1.22459 0.95303 1.03048 1.02821 1.21578 0.93796 0.98654 0.90498 0.88269 1.59793 1.57382 1.08140 1.01235 1.22384 1.02610 0.96976 0.87182 1.23145 0.92075 1.02834 1.02860 1.23244 1.02023 1.01136 0.96947 1.20274 0.81422 0.85325 0.84405 1.90653 1.37757 1.26363 1.86625 1.46448 1.52191 1.31387 1.06477 1.19081 0.95288 0.92815 0.79861 1.21272 1.32983 1.13138 0.90609 0.91902 1.24955 0.94877 0.94985 0.99225 1.69990 1.35744 1.22534 1.24031 0.86373 0.78617 0.79484 0.82498 1.19659 1.20822 1.20799 0.91035 0.92120 0.91815 0.83063 0.88307 0.89029 0.88131 0.88570 0.88941 0.77956 0.95648 0.95599 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.06 37.16 0.34 -1.74 16 2 C 0.07 1.00 2.90 -68.87 -0.20 0.80 16 3 H 0.10 1.32 7.74 -51.93 -0.40 0.92 16 4 N -0.63 -9.10 5.98 -100.95 -0.60 -9.70 16 5 C 0.02 0.22 5.97 -67.71 -0.40 -0.19 16 6 C -0.17 -1.84 10.46 -26.73 -0.28 -2.12 16 7 C -0.20 -1.85 10.33 -26.73 -0.28 -2.13 16 8 C 0.50 10.30 7.22 -10.98 -0.08 10.22 16 9 O -0.54 -13.49 16.43 5.56 0.09 -13.40 16 10 N -0.72 -15.24 5.44 -61.47 -0.33 -15.58 16 11 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 12 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 13 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 16 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 21 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 22 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 23 H 0.35 4.79 8.43 -39.29 -0.33 4.45 16 24 H 0.10 0.99 7.77 -51.93 -0.40 0.58 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 7.04 7.74 -40.82 -0.32 6.73 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 278.29 15.07 4.19 4.19 Total: -1.00 -32.37 278.29 -7.04 -39.41 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.76 Total: 6.68 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.35 Total: -1.90 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.20 Total: -50.89 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.37 -7.04 -39.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383029505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.548 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds