Wall clock time and date at job start Mon Mar 30 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46923 * 2 1 4 4 C 1.50697 * 109.47052 * 119.99967 * 2 1 3 5 5 H 1.07996 * 120.00127 * 119.99525 * 4 2 1 6 6 C 1.37877 * 119.99938 * 300.00270 * 4 2 1 7 7 N 1.31515 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00086 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47455 * 59.99439 * 8 6 4 10 10 H 1.48500 * 109.47500 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46708 * 299.99496 * 8 6 4 12 12 N 1.46494 * 109.47035 * 239.99999 * 2 1 3 13 13 C 1.46502 * 120.00151 * 299.99947 * 12 2 1 14 14 C 1.34773 * 120.00173 * 120.00182 * 12 2 1 15 15 O 1.21277 * 120.00017 * 359.97438 * 14 12 2 16 16 C 1.50700 * 120.00126 * 179.97438 * 14 12 2 17 17 H 1.09000 * 112.74842 * 311.26713 * 16 14 12 18 18 C 1.53633 * 113.51651 * 82.06914 * 16 14 12 19 19 C 1.53517 * 83.53579 * 140.75792 * 18 16 14 20 20 N 1.47479 * 87.99753 * 334.02425 * 19 18 16 21 21 H 1.08993 * 109.47240 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47275 * 300.00539 * 1 2 3 23 23 H 1.08999 * 109.47231 * 59.99881 * 1 2 3 24 24 H 0.97008 * 119.99854 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47604 * 270.00568 * 13 12 2 26 26 H 1.09004 * 109.46922 * 30.00126 * 13 12 2 27 27 H 1.09001 * 109.47463 * 149.99942 * 13 12 2 28 28 H 1.09000 * 114.17137 * 27.13204 * 18 16 14 29 29 H 1.09000 * 114.20704 * 254.38792 * 18 16 14 30 30 H 1.09002 * 113.47888 * 219.22784 * 19 18 16 31 31 H 1.09003 * 113.47419 * 88.82117 * 19 18 16 32 32 H 1.00899 * 111.00117 * 138.66596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3224 -1.1195 4.0079 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0081 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.0858 1.1256 -1.8916 16 6 3.2960 -0.7462 -3.3134 17 1 3.7410 -1.7154 -3.0881 18 6 2.2697 -0.7950 -4.4557 19 6 3.5001 -0.5458 -5.3393 20 7 4.1390 0.1007 -4.1779 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 0.7088 1.1614 3.4844 25 1 2.4156 -2.7378 -0.9716 26 1 0.6904 -2.3002 -0.9846 27 1 1.6238 -2.2853 -2.5002 28 1 1.5529 0.0261 -4.4470 29 1 1.8073 -1.7715 -4.5997 30 1 3.3095 0.1380 -6.1665 31 1 3.9998 -1.4613 -5.6560 32 1 5.1102 -0.1632 -4.1061 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384816382.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:03 Heat of formation + Delta-G solvation = 4.481926 kcal Electronic energy + Delta-G solvation = -14600.263736 eV Core-core repulsion = 12176.312067 eV Total energy + Delta-G solvation = -2423.951669 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.11699 -37.74823 -35.14965 -32.79081 -29.65936 -27.61226 -26.54099 -25.92021 -25.15566 -21.59626 -19.86859 -18.20016 -17.28340 -16.54940 -15.99052 -15.43149 -14.51191 -14.35028 -13.54223 -13.32231 -12.65214 -12.54888 -12.26418 -11.84973 -11.61337 -11.47197 -11.20425 -11.03988 -11.00249 -10.78443 -10.62432 -10.22111 -10.13246 -9.20970 -9.11508 -8.55471 -8.36505 -7.50912 -6.04160 -4.12243 3.29137 3.33574 3.34619 3.40371 3.84482 4.34899 4.42719 4.55012 4.90398 5.22073 5.25092 5.27062 5.41734 5.63866 5.67492 5.80774 6.01969 6.07833 6.09207 6.31213 6.80143 6.86391 7.10015 7.24544 7.51117 7.57905 7.75403 8.06433 8.23983 8.60473 8.87852 9.17248 9.54450 11.01096 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051950 B = 0.007978 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.850857 B = 3508.779926 C = 3549.090960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.595 5.595 13 C 0.088 3.912 14 C 0.514 3.486 15 O -0.533 6.533 16 C 0.010 3.990 17 H 0.090 0.910 18 C -0.128 4.128 19 C -0.001 4.001 20 N -0.598 5.598 21 H 0.030 0.970 22 H 0.093 0.907 23 H 0.011 0.989 24 H 0.264 0.736 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -7.496 -11.591 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.057 4.057 14 C 0.299 3.701 15 O -0.410 6.410 16 C -0.105 4.105 17 H 0.108 0.892 18 C -0.166 4.166 19 C -0.131 4.131 20 N -0.223 5.223 21 H 0.049 0.951 22 H 0.112 0.888 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.233 -5.905 -11.261 12.775 hybrid contribution 0.724 -1.642 0.889 2.003 sum 1.957 -7.547 -10.372 12.976 Atomic orbital electron populations 1.22091 0.98317 0.99287 1.00828 1.18906 0.90801 0.94523 0.79930 0.91968 1.21293 1.31811 1.12947 0.90372 0.92413 1.24899 0.94992 0.94992 0.98943 1.69875 1.36377 1.22579 1.23822 0.86554 0.79225 0.79538 0.82038 1.20291 1.21148 1.20265 1.48199 1.49572 1.11515 1.23455 1.21545 1.01528 0.83424 0.99162 1.19969 0.79587 0.87160 0.83406 1.90650 1.57608 1.16821 1.75877 1.23254 0.96568 0.96190 0.94449 0.89177 1.23144 0.96516 1.03019 0.93951 1.23515 0.95439 0.98266 0.95883 1.67207 1.06447 1.46087 1.02570 0.95139 0.88849 0.96973 0.92643 0.93577 0.90897 0.93093 0.88484 0.90130 0.89558 0.91777 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.78 2.64 -69.09 -0.18 6.60 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.53 -14.50 8.37 -34.44 -0.29 -14.79 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 N -0.59 -13.00 2.75 -175.27 -0.48 -13.48 16 13 C 0.09 1.47 9.34 59.85 0.56 2.03 16 14 C 0.51 11.15 7.25 -10.99 -0.08 11.07 16 15 O -0.53 -14.14 15.99 5.56 0.09 -14.05 16 16 C 0.01 0.15 3.07 -72.51 -0.22 -0.07 16 17 H 0.09 1.19 7.84 -51.93 -0.41 0.79 16 18 C -0.13 -1.61 7.26 -26.13 -0.19 -1.80 16 19 C 0.00 -0.01 8.61 -7.54 -0.06 -0.07 16 20 N -0.60 -9.03 8.14 -116.49 -0.95 -9.98 16 21 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 22 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 27 H 0.05 0.67 5.76 -51.93 -0.30 0.37 16 28 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 29 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.32 4.17 8.91 -39.29 -0.35 3.82 16 LS Contribution 262.74 15.07 3.96 3.96 Total: -1.00 -32.74 262.74 -6.46 -39.20 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.46 Total: 1.58 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.23 Total: 1.42 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.80 Total: -48.40 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.74 -6.46 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384816382.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.682 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds