Wall clock time and date at job start Mon Mar 30 2020 02:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46923 * 2 1 4 4 C 1.50697 * 109.47052 * 119.99967 * 2 1 3 5 5 H 1.07996 * 120.00127 * 119.99525 * 4 2 1 6 6 C 1.37877 * 119.99938 * 300.00270 * 4 2 1 7 7 N 1.31515 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00086 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47455 * 59.99439 * 8 6 4 10 10 H 1.48500 * 109.47500 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46708 * 299.99496 * 8 6 4 12 12 N 1.46494 * 109.47035 * 239.99999 * 2 1 3 13 13 C 1.46502 * 120.00151 * 299.99947 * 12 2 1 14 14 C 1.34773 * 120.00173 * 120.00182 * 12 2 1 15 15 O 1.21277 * 120.00017 * 359.97438 * 14 12 2 16 16 C 1.50700 * 120.00126 * 179.97438 * 14 12 2 17 17 H 1.09000 * 112.74842 * 311.26713 * 16 14 12 18 18 C 1.53633 * 113.51651 * 82.06914 * 16 14 12 19 19 C 1.53517 * 83.53579 * 140.75792 * 18 16 14 20 20 N 1.47479 * 87.99753 * 334.02425 * 19 18 16 21 21 H 1.08993 * 109.47240 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47275 * 300.00539 * 1 2 3 23 23 H 1.08999 * 109.47231 * 59.99881 * 1 2 3 24 24 H 0.97008 * 119.99854 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47604 * 270.00568 * 13 12 2 26 26 H 1.09004 * 109.46922 * 30.00126 * 13 12 2 27 27 H 1.09001 * 109.47463 * 149.99942 * 13 12 2 28 28 H 1.09000 * 114.17137 * 27.13204 * 18 16 14 29 29 H 1.09000 * 114.20704 * 254.38792 * 18 16 14 30 30 H 1.09002 * 113.47888 * 219.22784 * 19 18 16 31 31 H 1.09003 * 113.47419 * 88.82117 * 19 18 16 32 32 H 1.00899 * 111.00117 * 138.66596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3224 -1.1195 4.0079 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0081 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.0858 1.1256 -1.8916 16 6 3.2960 -0.7462 -3.3134 17 1 3.7410 -1.7154 -3.0881 18 6 2.2697 -0.7950 -4.4557 19 6 3.5001 -0.5458 -5.3393 20 7 4.1390 0.1007 -4.1779 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 0.7088 1.1614 3.4844 25 1 2.4156 -2.7378 -0.9716 26 1 0.6904 -2.3002 -0.9846 27 1 1.6238 -2.2853 -2.5002 28 1 1.5529 0.0261 -4.4470 29 1 1.8073 -1.7715 -4.5997 30 1 3.3095 0.1380 -6.1665 31 1 3.9998 -1.4613 -5.6560 32 1 5.1102 -0.1632 -4.1061 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384816382.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:02 Heat of formation + Delta-G solvation = -21.472511 kcal Electronic energy + Delta-G solvation = -14601.389205 eV Core-core repulsion = 12176.312067 eV Total energy + Delta-G solvation = -2425.077138 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.43995 -39.23263 -37.01273 -34.77566 -31.58309 -28.69800 -27.84853 -27.44297 -27.19062 -23.22614 -21.21087 -19.73452 -18.57480 -18.38860 -17.51514 -17.20542 -16.32859 -15.92388 -15.06490 -14.66596 -14.31141 -14.02113 -13.77352 -13.46978 -13.06787 -12.93504 -12.76928 -12.72899 -12.61964 -12.22500 -12.16276 -12.14423 -12.08861 -11.19369 -10.63491 -10.48029 -9.80963 -9.29351 -8.14855 -6.32371 1.40364 1.43410 1.50835 1.80164 2.29757 2.46877 3.12449 3.29634 3.43809 3.77044 4.02749 4.26785 4.44409 4.50781 4.68878 4.77121 4.82317 4.87288 4.88082 5.01520 5.04152 5.09113 5.15637 5.46003 5.64040 5.68433 6.04989 6.16098 6.30949 6.76191 6.88756 7.33523 7.54309 8.89389 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051950 B = 0.007978 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.850857 B = 3508.779926 C = 3549.090960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.002 0.998 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.260 1.260 12 N -0.601 5.601 13 C 0.083 3.917 14 C 0.499 3.501 15 O -0.598 6.598 16 C 0.015 3.985 17 H 0.124 0.876 18 C -0.122 4.122 19 C 0.013 3.987 20 N -0.638 5.638 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.018 0.982 24 H 0.265 0.735 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -10.426 -12.819 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.020 0.980 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.184 1.184 12 N -0.332 5.332 13 C -0.059 4.059 14 C 0.287 3.713 15 O -0.479 6.479 16 C -0.099 4.099 17 H 0.142 0.858 18 C -0.160 4.160 19 C -0.116 4.116 20 N -0.264 5.264 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.529 -8.889 -12.524 15.434 hybrid contribution 0.644 -0.682 1.231 1.548 sum 2.173 -9.572 -11.294 14.963 Atomic orbital electron populations 1.21870 0.97099 1.00223 0.99844 1.18496 0.91694 0.92007 0.81959 0.98019 1.21568 1.32005 1.13101 0.91199 0.92072 1.25791 0.95068 0.95658 1.02171 1.70031 1.37349 1.23931 1.24516 0.85477 0.78330 0.79054 0.77955 1.20356 1.20850 1.18429 1.48222 1.49441 1.13433 1.22115 1.21834 1.01520 0.80252 1.02306 1.21241 0.78518 0.86779 0.84778 1.90608 1.59837 1.19904 1.77576 1.23340 0.98294 0.96439 0.91825 0.85821 1.23178 0.96259 1.04245 0.92336 1.23582 0.93973 0.99604 0.94441 1.67159 1.07335 1.47593 1.04363 0.93039 0.91499 0.96252 0.92615 0.92665 0.91131 0.88579 0.90969 0.86198 0.89089 0.87963 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.95 71.98 0.64 -5.90 16 2 C 0.26 14.11 2.64 44.25 0.12 14.23 16 3 H 0.00 0.12 6.90 -2.39 -0.02 0.10 16 4 C -0.54 -30.16 8.37 25.60 0.21 -29.95 16 5 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.38 11.32 21.45 0.24 -54.14 16 8 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 12 N -0.60 -26.15 2.75 -826.81 -2.28 -28.43 16 13 C 0.08 2.56 9.34 127.77 1.19 3.76 16 14 C 0.50 21.80 7.25 87.66 0.64 22.44 16 15 O -0.60 -33.35 15.99 -3.02 -0.05 -33.39 16 16 C 0.02 0.44 3.07 41.48 0.13 0.56 16 17 H 0.12 2.73 7.84 -2.39 -0.02 2.71 16 18 C -0.12 -2.64 7.26 30.98 0.22 -2.41 16 19 C 0.01 0.24 8.61 83.58 0.72 0.96 16 20 N -0.64 -18.15 8.14 -522.48 -4.25 -22.40 16 21 H 0.05 2.28 6.66 -2.39 -0.02 2.26 16 22 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 23 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 2.21 6.43 -2.38 -0.02 2.20 16 27 H 0.10 2.08 5.76 -2.39 -0.01 2.06 16 28 H 0.07 1.94 8.11 -2.39 -0.02 1.92 16 29 H 0.12 1.65 7.69 -2.39 -0.02 1.63 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.33 7.96 8.91 -89.69 -0.80 7.16 16 Total: -1.00 -75.86 262.74 0.33 -75.53 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.32 Total: 12.30 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 4.33 Total: 4.85 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -6.29 Total: -104.97 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.05 Total: -33.39 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -75.86 0.33 -75.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384816382.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.055 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds