Wall clock time and date at job start Mon Mar 30 2020 02:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.46501 * 120.00098 * 270.00050 * 3 2 1 5 5 C 1.50700 * 109.46743 * 90.00098 * 4 3 2 6 6 H 1.07996 * 120.00425 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99720 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99952 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46972 * 120.00271 * 9 7 5 12 12 H 1.48502 * 109.46999 * 239.99743 * 9 7 5 13 13 C 1.34771 * 119.99594 * 90.00195 * 3 2 1 14 14 O 1.21283 * 120.00089 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00335 * 0.02562 * 13 3 2 16 16 H 1.08996 * 112.74834 * 48.73412 * 15 13 3 17 17 C 1.53513 * 113.47322 * 277.88077 * 15 13 3 18 18 C 1.53515 * 83.57681 * 219.21018 * 17 15 13 19 19 N 1.47484 * 87.93264 * 26.02513 * 18 17 15 20 20 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 21 21 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 24 24 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 25 25 H 1.09000 * 109.46877 * 210.00112 * 4 3 2 26 26 H 1.09000 * 109.47251 * 330.00217 * 4 3 2 27 27 H 0.96994 * 119.99936 * 179.97438 * 8 7 5 28 28 H 1.08995 * 114.17109 * 332.85652 * 17 15 13 29 29 H 1.09007 * 114.16502 * 105.56226 * 17 15 13 30 30 H 1.09006 * 113.47441 * 271.26036 * 18 17 15 31 31 H 1.08988 * 113.53158 * 140.80455 * 18 17 15 32 32 H 1.00891 * 111.00028 * 221.30124 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 1.0066 2.7823 -1.7037 6 1 0.1159 2.7254 -1.0957 7 6 0.9951 3.5058 -2.8773 8 7 2.0801 3.5755 -3.6175 9 14 -0.5613 4.3869 -3.4161 10 1 -1.6336 4.1540 -2.4157 11 1 -0.2934 5.8437 -3.5239 12 1 -0.9940 3.8643 -4.7371 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 1 2.4435 0.3142 2.5056 17 6 0.5198 1.3243 2.9057 18 6 1.1136 1.5324 4.3060 19 7 2.2960 2.1295 3.6575 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.0644 2.7986 -1.1383 26 1 2.5506 1.3453 -2.0284 27 1 2.0719 4.0841 -4.4433 28 1 -0.0455 2.1768 2.5294 29 1 0.0047 0.3724 2.7763 30 1 1.3293 0.6007 4.8291 31 1 0.5507 2.2380 4.9168 32 1 3.1470 1.8215 4.1034 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384817643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:37 Heat of formation + Delta-G solvation = -25.664891 kcal Electronic energy + Delta-G solvation = -14674.646960 eV Core-core repulsion = 12249.388027 eV Total energy + Delta-G solvation = -2425.258933 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47086 -39.13175 -36.89494 -34.83397 -31.55144 -29.80017 -28.67712 -27.47210 -24.66996 -24.03547 -21.53888 -19.52027 -18.73304 -18.49286 -17.71147 -17.10381 -16.27458 -15.75717 -15.07456 -14.58291 -14.50951 -14.27678 -13.87434 -13.54933 -13.30062 -12.95729 -12.88006 -12.75181 -12.56348 -12.37038 -12.14141 -11.93561 -11.64154 -11.59100 -10.63838 -10.57403 -9.76825 -9.41289 -8.21505 -6.34777 1.34102 1.37172 1.48597 1.85332 2.27033 2.42621 3.07677 3.29352 3.46032 3.76449 3.91627 4.24131 4.26954 4.49067 4.54034 4.66232 4.80096 4.82671 4.93896 5.05783 5.07509 5.09633 5.16795 5.25123 5.57182 5.62176 5.89677 6.08709 6.33953 6.73335 6.85944 7.30676 7.56746 8.86010 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.037549 B = 0.009017 C = 0.008855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.503923 B = 3104.395303 C = 3161.211136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.260 3.740 5 C -0.530 4.530 6 H 0.054 0.946 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.501 3.499 14 O -0.592 6.592 15 C 0.018 3.982 16 H 0.132 0.868 17 C -0.125 4.125 18 C 0.014 3.986 19 N -0.638 5.638 20 H 0.061 0.939 21 H 0.035 0.965 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.105 0.895 25 H -0.009 1.009 26 H 0.023 0.977 27 H 0.266 0.734 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -12.246 12.877 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.138 3.862 5 C -0.569 4.569 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.290 3.710 14 O -0.472 6.472 15 C -0.096 4.096 16 H 0.149 0.851 17 C -0.162 4.162 18 C -0.115 4.115 19 N -0.265 5.265 20 H 0.080 0.920 21 H 0.054 0.946 22 H 0.112 0.888 23 H 0.092 0.908 24 H 0.123 0.877 25 H 0.009 0.991 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.341 -10.756 12.523 17.069 hybrid contribution -0.032 0.090 -0.703 0.710 sum -4.373 -10.666 11.820 16.510 Atomic orbital electron populations 1.22301 0.95371 1.02999 1.02115 1.21753 0.95458 0.80871 1.03672 1.48297 1.64091 1.15072 1.05978 1.18735 0.95375 0.91542 0.80546 1.21718 0.97831 1.31193 1.06147 0.92733 1.25879 0.99885 0.97093 0.96664 1.70064 1.29564 1.42631 1.14882 0.85399 0.79174 0.77976 0.78464 1.19065 1.21006 1.19279 1.21168 0.77120 0.86478 0.86269 1.90627 1.48027 1.20595 1.87944 1.23334 1.00013 0.96886 0.89388 0.85087 1.23181 0.92914 1.03841 0.96303 1.23593 0.91855 1.00266 0.95835 1.67158 1.06478 1.48533 1.04310 0.92009 0.94618 0.88796 0.90795 0.87661 0.99082 0.95912 0.92532 0.91775 0.86256 0.87592 0.89391 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.69 10.21 71.98 0.73 -3.96 16 2 C 0.10 3.12 5.97 86.38 0.52 3.64 16 3 N -0.60 -26.17 2.46 -826.13 -2.03 -28.20 16 4 C 0.26 14.49 5.20 85.63 0.45 14.93 16 5 C -0.53 -31.29 8.92 25.60 0.23 -31.06 16 6 H 0.05 3.19 7.42 -2.91 -0.02 3.17 16 7 C 0.00 0.18 5.46 84.65 0.46 0.65 16 8 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 9 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.50 22.04 7.25 87.66 0.64 22.67 16 14 O -0.59 -33.56 16.24 -3.04 -0.05 -33.61 16 15 C 0.02 0.51 3.23 41.45 0.13 0.64 16 16 H 0.13 2.62 6.94 -2.39 -0.02 2.60 16 17 C -0.12 -2.92 6.20 30.94 0.19 -2.73 16 18 C 0.01 0.26 8.62 83.58 0.72 0.98 16 19 N -0.64 -18.17 8.14 -523.02 -4.26 -22.43 16 20 H 0.06 1.62 5.09 -2.38 -0.01 1.61 16 21 H 0.03 1.27 7.26 -2.39 -0.02 1.25 16 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 2.20 7.89 -2.38 -0.02 2.18 16 24 H 0.11 2.17 6.21 -2.39 -0.01 2.16 16 25 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 26 H 0.02 1.28 7.89 -2.39 -0.02 1.26 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.06 1.97 8.11 -2.39 -0.02 1.95 16 29 H 0.12 1.90 7.19 -2.38 -0.02 1.88 16 30 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.33 7.68 8.91 -89.70 -0.80 6.88 16 Total: -1.00 -80.37 265.10 0.36 -80.01 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.32 Total: 7.83 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.07 Total: 5.77 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -6.00 Total: -108.19 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.05 Total: -33.61 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -80.37 0.36 -80.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384817643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.343 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds