Wall clock time and date at job start Mon Mar 30 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53001 * 109.46902 * 174.52578 * 3 2 1 5 5 C 1.53003 * 109.47308 * 294.09235 * 4 3 2 6 6 C 1.52993 * 109.47246 * 294.52995 * 3 2 1 7 7 H 1.08996 * 110.33249 * 306.65038 * 6 3 2 8 8 C 1.54485 * 110.36937 * 184.40344 * 6 3 2 9 9 C 1.54506 * 104.06326 * 217.18846 * 8 6 3 10 10 C 1.54478 * 104.06434 * 0.02562 * 9 8 6 11 11 H 1.09001 * 110.37763 * 265.14747 * 10 9 8 12 12 C 1.50704 * 110.37270 * 142.91567 * 10 9 8 13 13 H 1.07995 * 120.00234 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99966 * 180.02562 * 12 10 9 15 15 N 1.31514 * 119.99848 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99998 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47029 * 90.00097 * 16 14 12 18 18 H 1.48494 * 109.46944 * 209.99803 * 16 14 12 19 19 H 1.48497 * 109.46837 * 330.00256 * 16 14 12 20 20 O 1.44429 * 104.80308 * 23.98120 * 10 9 8 21 21 H 1.09000 * 109.47293 * 184.60043 * 1 2 3 22 22 H 1.09004 * 109.47310 * 304.59846 * 1 2 3 23 23 H 1.09001 * 109.47436 * 64.59862 * 1 2 3 24 24 H 1.08995 * 109.47302 * 120.00757 * 2 1 3 25 25 H 1.09006 * 109.46745 * 240.00764 * 2 1 3 26 26 H 1.09000 * 109.46528 * 54.52931 * 3 2 1 27 27 H 1.08998 * 109.46990 * 54.09400 * 4 3 2 28 28 H 1.09003 * 109.46895 * 174.09643 * 4 3 2 29 29 H 1.08995 * 109.46949 * 185.79487 * 5 4 3 30 30 H 1.09000 * 109.47023 * 305.79763 * 5 4 3 31 31 H 1.08997 * 109.46875 * 65.79581 * 5 4 3 32 32 H 1.08997 * 110.51589 * 335.83695 * 8 6 3 33 33 H 1.08999 * 110.50971 * 98.41101 * 8 6 3 34 34 H 1.09005 * 110.51124 * 118.64623 * 9 8 6 35 35 H 1.08998 * 110.51710 * 241.35944 * 9 8 6 36 36 H 0.97002 * 119.99922 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5638 1.4446 0.1376 5 6 3.9525 0.8987 1.5131 6 6 1.6454 2.1230 -1.3122 7 1 1.9797 1.5286 -2.1625 8 6 2.2443 3.5453 -1.3817 9 6 1.1457 4.3818 -2.0750 10 6 0.0127 3.3661 -2.3418 11 1 0.0947 2.9626 -3.3510 12 6 -1.3323 4.0170 -2.1457 13 1 -1.3925 5.0563 -1.8583 14 6 -2.4860 3.2856 -2.3332 15 7 -2.4126 2.0199 -2.6826 16 14 -4.1532 4.0926 -2.0908 17 1 -4.6113 4.6781 -3.3763 18 1 -5.1335 3.0755 -1.6330 19 1 -4.0400 5.1656 -1.0706 20 8 0.2156 2.3220 -1.3647 21 1 -0.3634 -1.0243 0.0824 22 1 -0.3634 0.5835 0.8459 23 1 -0.3634 0.4408 -0.9283 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.5988 1.9837 0.8370 27 1 3.9996 0.8163 -0.6391 28 1 3.9366 2.4635 0.0326 29 1 5.0293 0.9956 1.6513 30 1 3.4343 1.4637 2.2879 31 1 3.6707 -0.1521 1.5797 32 1 2.4396 3.9269 -0.3796 33 1 3.1589 3.5460 -1.9746 34 1 0.7978 5.1769 -1.4155 35 1 1.5158 4.7965 -3.0125 36 1 -3.2243 1.5052 -2.8142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388170424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:07 Heat of formation + Delta-G solvation = -77.381244 kcal Electronic energy + Delta-G solvation = -15090.374041 eV Core-core repulsion = 12766.412862 eV Total energy + Delta-G solvation = -2323.961179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.63215 -35.66910 -32.45706 -31.54531 -30.44454 -28.75919 -26.06149 -23.61452 -22.18489 -21.07939 -20.12112 -19.08905 -16.56850 -15.43542 -14.59297 -14.43829 -14.29445 -13.95015 -13.28958 -13.08156 -12.68924 -12.32100 -11.92810 -11.66513 -11.51884 -11.16352 -11.00581 -10.90356 -10.60523 -10.46429 -10.34001 -10.25883 -10.01819 -9.92966 -9.46631 -9.34698 -9.01674 -8.52196 -7.97942 -5.98325 -4.09574 3.32441 3.39349 3.42832 4.44962 4.89191 5.17894 5.29316 5.34657 5.53291 5.65222 5.73481 5.82392 5.88469 5.94861 6.01008 6.12895 6.20969 6.23553 6.31458 6.40542 6.49304 6.59513 6.66008 6.70528 6.73037 6.83298 6.89318 6.94148 7.05291 7.55045 7.61574 7.92488 8.30699 8.62734 9.02075 9.60298 11.09527 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039728 B = 0.009187 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.620844 B = 3047.117553 C = 3488.629446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.079 4.079 4 C -0.119 4.119 5 C -0.150 4.150 6 C 0.071 3.929 7 H 0.045 0.955 8 C -0.148 4.148 9 C -0.147 4.147 10 C 0.203 3.797 11 H 0.024 0.976 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.077 3.923 15 N -0.864 5.864 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.341 6.341 21 H 0.031 0.969 22 H 0.044 0.956 23 H 0.101 0.899 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 -1.814 4.490 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.098 4.098 4 C -0.157 4.157 5 C -0.207 4.207 6 C 0.012 3.988 7 H 0.063 0.937 8 C -0.186 4.186 9 C -0.185 4.185 10 C 0.147 3.853 11 H 0.042 0.958 12 C -0.564 4.564 13 H 0.079 0.921 14 C -0.128 4.128 15 N -0.501 5.501 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.260 6.260 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.119 0.881 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.239 -2.090 4.570 10.517 hybrid contribution -0.717 0.486 0.016 0.866 sum 8.522 -1.603 4.586 9.809 Atomic orbital electron populations 1.21903 0.94445 0.99397 1.05481 1.21495 0.97398 0.95539 1.00175 1.21263 0.93955 0.96494 0.98093 1.21568 0.95981 1.01097 0.97058 1.21799 1.00269 1.01202 0.97459 1.22750 0.86791 0.93897 0.95336 0.93719 1.22961 0.98196 0.97268 1.00184 1.23033 0.96628 0.99880 0.98983 1.20500 0.92554 0.83156 0.89058 0.95847 1.21037 0.89755 0.96535 1.49101 0.92062 1.25056 0.99169 0.94698 0.93893 1.70017 1.28197 1.07128 1.44712 0.86640 0.83916 0.79239 0.78419 1.20618 1.21122 1.19831 1.89502 1.16262 1.57871 1.62359 0.95020 0.93666 0.88055 0.93304 0.92999 0.90945 0.92347 0.91916 0.93359 0.92856 0.92695 0.92100 0.92715 0.92008 0.93057 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.15 37.16 0.34 -2.73 16 2 C -0.11 -1.83 5.28 -26.73 -0.14 -1.97 16 3 C -0.08 -1.35 1.67 -90.62 -0.15 -1.51 16 4 C -0.12 -1.63 5.21 -26.73 -0.14 -1.77 16 5 C -0.15 -1.77 9.55 37.16 0.35 -1.41 16 6 C 0.07 1.43 2.75 -25.96 -0.07 1.36 16 7 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 8 C -0.15 -2.73 5.37 -25.16 -0.14 -2.87 16 9 C -0.15 -3.15 6.62 -25.17 -0.17 -3.32 16 10 C 0.20 5.29 3.05 -27.11 -0.08 5.20 16 11 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 12 C -0.53 -14.93 8.78 -34.44 -0.30 -15.23 16 13 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 14 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 15 N -0.86 -25.44 13.07 55.43 0.72 -24.72 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 O -0.34 -8.62 7.73 -35.23 -0.27 -8.89 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.10 2.44 5.78 -51.93 -0.30 2.14 16 24 H 0.05 0.72 6.49 -51.93 -0.34 0.38 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.84 6.64 -51.93 -0.34 0.49 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.63 6.76 -51.93 -0.35 0.28 16 32 H 0.06 1.06 7.42 -51.93 -0.39 0.67 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.33 7.71 -51.93 -0.40 0.93 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 280.76 15.07 4.23 4.23 Total: -1.00 -29.15 280.76 -7.23 -36.38 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.30 Total: -1.39 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -0.59 Total: -22.14 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.72 Total: -24.72 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.27 Total: -8.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.15 -7.23 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.003 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds