Wall clock time and date at job start Mon Mar 30 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53001 * 109.46902 * 174.52578 * 3 2 1 5 5 C 1.53003 * 109.47308 * 294.09235 * 4 3 2 6 6 C 1.52993 * 109.47246 * 294.52995 * 3 2 1 7 7 H 1.08996 * 110.33249 * 306.65038 * 6 3 2 8 8 C 1.54485 * 110.36937 * 184.40344 * 6 3 2 9 9 C 1.54506 * 104.06326 * 217.18846 * 8 6 3 10 10 C 1.54478 * 104.06434 * 0.02562 * 9 8 6 11 11 H 1.09001 * 110.37763 * 265.14747 * 10 9 8 12 12 C 1.50704 * 110.37270 * 142.91567 * 10 9 8 13 13 H 1.07995 * 120.00234 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99966 * 180.02562 * 12 10 9 15 15 N 1.31514 * 119.99848 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99998 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47029 * 90.00097 * 16 14 12 18 18 H 1.48494 * 109.46944 * 209.99803 * 16 14 12 19 19 H 1.48497 * 109.46837 * 330.00256 * 16 14 12 20 20 O 1.44429 * 104.80308 * 23.98120 * 10 9 8 21 21 H 1.09000 * 109.47293 * 184.60043 * 1 2 3 22 22 H 1.09004 * 109.47310 * 304.59846 * 1 2 3 23 23 H 1.09001 * 109.47436 * 64.59862 * 1 2 3 24 24 H 1.08995 * 109.47302 * 120.00757 * 2 1 3 25 25 H 1.09006 * 109.46745 * 240.00764 * 2 1 3 26 26 H 1.09000 * 109.46528 * 54.52931 * 3 2 1 27 27 H 1.08998 * 109.46990 * 54.09400 * 4 3 2 28 28 H 1.09003 * 109.46895 * 174.09643 * 4 3 2 29 29 H 1.08995 * 109.46949 * 185.79487 * 5 4 3 30 30 H 1.09000 * 109.47023 * 305.79763 * 5 4 3 31 31 H 1.08997 * 109.46875 * 65.79581 * 5 4 3 32 32 H 1.08997 * 110.51589 * 335.83695 * 8 6 3 33 33 H 1.08999 * 110.50971 * 98.41101 * 8 6 3 34 34 H 1.09005 * 110.51124 * 118.64623 * 9 8 6 35 35 H 1.08998 * 110.51710 * 241.35944 * 9 8 6 36 36 H 0.97002 * 119.99922 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5638 1.4446 0.1376 5 6 3.9525 0.8987 1.5131 6 6 1.6454 2.1230 -1.3122 7 1 1.9797 1.5286 -2.1625 8 6 2.2443 3.5453 -1.3817 9 6 1.1457 4.3818 -2.0750 10 6 0.0127 3.3661 -2.3418 11 1 0.0947 2.9626 -3.3510 12 6 -1.3323 4.0170 -2.1457 13 1 -1.3925 5.0563 -1.8583 14 6 -2.4860 3.2856 -2.3332 15 7 -2.4126 2.0199 -2.6826 16 14 -4.1532 4.0926 -2.0908 17 1 -4.6113 4.6781 -3.3763 18 1 -5.1335 3.0755 -1.6330 19 1 -4.0400 5.1656 -1.0706 20 8 0.2156 2.3220 -1.3647 21 1 -0.3634 -1.0243 0.0824 22 1 -0.3634 0.5835 0.8459 23 1 -0.3634 0.4408 -0.9283 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.5988 1.9837 0.8370 27 1 3.9996 0.8163 -0.6391 28 1 3.9366 2.4635 0.0326 29 1 5.0293 0.9956 1.6513 30 1 3.4343 1.4637 2.2879 31 1 3.6707 -0.1521 1.5797 32 1 2.4396 3.9269 -0.3796 33 1 3.1589 3.5460 -1.9746 34 1 0.7978 5.1769 -1.4155 35 1 1.5158 4.7965 -3.0125 36 1 -3.2243 1.5052 -2.8142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388170424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:07 Heat of formation + Delta-G solvation = -93.734723 kcal Electronic energy + Delta-G solvation = -15091.083181 eV Core-core repulsion = 12766.412862 eV Total energy + Delta-G solvation = -2324.670319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28454 -37.15538 -34.55971 -33.03494 -31.96059 -30.50099 -27.76487 -25.38571 -23.42450 -22.74381 -21.83574 -20.55104 -18.66417 -17.13079 -16.43659 -16.14821 -15.88348 -15.18598 -14.76658 -14.61849 -14.28839 -14.04828 -13.64913 -13.05878 -12.95063 -12.82649 -12.58268 -12.45320 -12.34672 -12.07445 -11.93879 -11.75153 -11.53082 -11.49458 -11.10407 -10.95765 -10.86090 -10.59147 -9.91717 -8.14010 -6.33250 1.39532 1.41171 1.51628 2.40914 3.06818 3.60556 3.85332 3.96826 4.19166 4.24017 4.35106 4.45043 4.48596 4.61609 4.66838 4.72380 4.82798 4.96601 4.99449 5.02765 5.08124 5.08758 5.14231 5.27619 5.28028 5.36837 5.38687 5.53209 5.55854 5.63875 5.75143 5.88368 6.22342 6.61212 6.98204 7.41051 8.93894 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039728 B = 0.009187 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.620844 B = 3047.117553 C = 3488.629446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.074 4.074 4 C -0.113 4.113 5 C -0.148 4.148 6 C 0.060 3.940 7 H 0.038 0.962 8 C -0.136 4.136 9 C -0.142 4.142 10 C 0.194 3.806 11 H -0.013 1.013 12 C -0.551 4.551 13 H 0.061 0.939 14 C 0.024 3.976 15 N -0.898 5.898 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.267 1.267 20 O -0.367 6.367 21 H 0.045 0.955 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 -1.541 5.601 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.092 4.092 4 C -0.150 4.150 5 C -0.205 4.205 6 C 0.002 3.998 7 H 0.056 0.944 8 C -0.173 4.173 9 C -0.180 4.180 10 C 0.138 3.862 11 H 0.005 0.995 12 C -0.588 4.588 13 H 0.079 0.921 14 C -0.178 4.178 15 N -0.535 5.535 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.192 1.192 20 O -0.287 6.287 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.687 -1.807 5.681 12.238 hybrid contribution -1.137 0.360 -0.354 1.244 sum 9.551 -1.447 5.327 11.031 Atomic orbital electron populations 1.21788 0.96973 0.99547 1.02376 1.21484 0.94938 0.96004 1.01709 1.21241 0.96616 0.95837 0.95533 1.21528 0.92781 1.02042 0.98691 1.21781 1.01600 1.01181 0.95911 1.23055 0.84369 0.95432 0.96969 0.94419 1.22914 0.98086 0.95095 1.01229 1.22926 0.96069 0.98954 1.00063 1.20377 0.93672 0.84487 0.87661 0.99531 1.21435 0.91400 0.96835 1.49179 0.92095 1.25908 1.03093 0.95235 0.93540 1.70159 1.29103 1.08521 1.45730 0.85567 0.79038 0.78288 0.78767 1.19466 1.20860 1.19176 1.89459 1.19801 1.57785 1.61648 0.93562 0.94804 0.92656 0.90368 0.92657 0.92323 0.91505 0.91166 0.91324 0.93101 0.92334 0.90567 0.89669 0.92401 0.91563 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 9.15 71.98 0.66 -5.33 16 2 C -0.10 -3.36 5.28 30.59 0.16 -3.20 16 3 C -0.07 -2.40 1.67 -10.80 -0.02 -2.42 16 4 C -0.11 -2.72 5.21 30.60 0.16 -2.56 16 5 C -0.15 -2.93 9.55 71.98 0.69 -2.25 16 6 C 0.06 2.40 2.75 31.10 0.09 2.49 16 7 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 8 C -0.14 -4.74 5.37 31.61 0.17 -4.57 16 9 C -0.14 -6.03 6.62 31.61 0.21 -5.82 16 10 C 0.19 10.44 3.05 30.35 0.09 10.53 16 11 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 12 C -0.55 -32.06 8.78 25.60 0.22 -31.83 16 13 H 0.06 3.43 7.57 -2.91 -0.02 3.41 16 14 C 0.02 1.42 5.43 84.66 0.46 1.88 16 15 N -0.90 -54.77 13.07 21.45 0.28 -54.49 16 16 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 O -0.37 -19.18 7.73 -148.98 -1.15 -20.33 16 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 2.77 5.78 -2.39 -0.01 2.75 16 24 H 0.08 2.09 6.49 -2.39 -0.02 2.07 16 25 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.60 6.64 -2.39 -0.02 1.59 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.12 6.76 -2.39 -0.02 1.10 16 32 H 0.08 2.44 7.42 -2.39 -0.02 2.42 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.06 2.47 7.71 -2.38 -0.02 2.45 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -64.99 280.76 5.06 -59.92 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.02 Total: 10.99 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 2.89 Total: -43.09 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.15 Total: -20.33 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.99 5.06 -59.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.810 kcal (2) G-P(sol) polarization free energy of solvation -64.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds