Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47039 * 2 1 4 4 C 1.53004 * 109.47192 * 65.00415 * 3 2 1 5 5 C 1.52996 * 109.47111 * 63.59694 * 4 3 2 6 6 C 1.53000 * 109.46994 * 184.99814 * 3 2 1 7 7 H 1.08994 * 109.82700 * 297.48196 * 6 3 2 8 8 C 1.54389 * 109.82963 * 176.59126 * 6 3 2 9 9 C 1.55298 * 102.25416 * 219.13154 * 8 6 3 10 10 C 1.54946 * 100.94475 * 34.13728 * 9 8 6 11 11 H 1.09006 * 110.39746 * 82.50646 * 10 9 8 12 12 C 1.50699 * 110.31411 * 204.63995 * 10 9 8 13 13 H 1.07998 * 119.99772 * 357.16130 * 12 10 9 14 14 C 1.37875 * 119.99958 * 177.16801 * 12 10 9 15 15 N 1.31512 * 120.00425 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99720 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47229 * 59.99646 * 16 14 12 18 18 H 1.48501 * 109.46807 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46811 * 299.99649 * 16 14 12 20 20 O 1.43247 * 109.82869 * 58.46659 * 6 3 2 21 21 H 1.08997 * 109.46764 * 299.99509 * 1 2 3 22 22 H 1.08997 * 109.47037 * 60.00167 * 1 2 3 23 23 H 1.09004 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46977 * 240.00523 * 2 1 3 25 25 H 1.08999 * 109.47183 * 120.00596 * 2 1 3 26 26 H 1.09002 * 109.47501 * 305.00169 * 3 2 1 27 27 H 1.08996 * 109.47248 * 183.60181 * 4 3 2 28 28 H 1.09001 * 109.46792 * 303.59875 * 4 3 2 29 29 H 1.08999 * 109.47191 * 185.72665 * 5 4 3 30 30 H 1.09005 * 109.47435 * 305.72885 * 5 4 3 31 31 H 1.09000 * 109.47251 * 65.73048 * 5 4 3 32 32 H 1.08996 * 110.84847 * 337.32750 * 8 6 3 33 33 H 1.09003 * 110.84124 * 100.94317 * 8 6 3 34 34 H 1.09000 * 111.12536 * 152.05517 * 9 8 6 35 35 H 1.09000 * 111.12975 * 276.21911 * 9 8 6 36 36 H 0.97000 * 120.00428 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.3177 1.4241 2.4829 6 6 3.5648 1.4443 -0.1257 7 1 4.0074 0.9454 0.7364 8 6 4.0814 2.8966 -0.2126 9 6 5.2183 2.7797 -1.2642 10 6 4.6425 1.6868 -2.1995 11 1 3.9466 2.1264 -2.9141 12 6 5.7575 0.9783 -2.9247 13 1 6.7803 1.2953 -2.7839 14 6 5.4719 -0.0746 -3.7678 15 7 4.2265 -0.4609 -3.9389 16 14 6.8540 -0.9523 -4.6672 17 1 7.7992 -1.5306 -3.6785 18 1 6.2874 -2.0400 -5.5045 19 1 7.5742 0.0155 -5.5331 20 8 3.9539 0.7738 -1.3302 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6054 1.9816 -0.8418 27 1 1.9426 3.1719 1.2808 28 1 0.5535 2.0687 1.4280 29 1 1.9516 1.8446 3.4196 30 1 2.0917 0.3583 2.4503 31 1 3.3960 1.5691 2.4165 32 1 3.2967 3.5672 -0.5626 33 1 4.4748 3.2265 0.7489 34 1 5.3580 3.7197 -1.7978 35 1 6.1489 2.4505 -0.8018 36 1 4.0256 -1.2019 -4.5318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388170426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = -75.630259 kcal Electronic energy + Delta-G solvation = -15055.195360 eV Core-core repulsion = 12731.310110 eV Total energy + Delta-G solvation = -2323.885251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.75428 -35.85143 -32.44616 -31.29301 -30.39694 -28.70735 -26.08004 -23.82118 -23.16935 -20.71204 -20.11502 -18.40384 -16.47206 -15.68784 -15.07834 -14.68966 -14.45641 -13.74360 -13.02414 -12.84962 -12.55190 -12.25190 -12.08206 -11.80613 -11.64320 -11.57085 -11.02713 -10.85770 -10.58783 -10.55856 -10.41061 -10.27745 -10.12025 -9.83444 -9.55686 -9.51111 -9.01219 -8.49982 -7.73883 -5.94558 -4.07383 3.35179 3.39613 3.42000 4.46643 5.02478 5.19843 5.27994 5.38624 5.55866 5.62367 5.69211 5.69831 5.78616 5.84263 6.04656 6.07337 6.12944 6.19675 6.31952 6.33321 6.39379 6.49673 6.55487 6.59484 6.70380 6.72572 6.82188 6.88417 7.10287 7.12587 7.65955 7.94481 8.33897 8.72464 9.12072 9.63042 11.12676 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037920 B = 0.009068 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.220134 B = 3087.034948 C = 3563.473376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.118 4.118 5 C -0.155 4.155 6 C 0.078 3.922 7 H 0.058 0.942 8 C -0.150 4.150 9 C -0.149 4.149 10 C 0.212 3.788 11 H 0.024 0.976 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.078 3.922 15 N -0.862 5.862 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.352 6.352 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 3.918 8.923 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.112 4.112 4 C -0.156 4.156 5 C -0.212 4.212 6 C 0.019 3.981 7 H 0.076 0.924 8 C -0.188 4.188 9 C -0.187 4.187 10 C 0.156 3.844 11 H 0.042 0.958 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.127 4.127 15 N -0.498 5.498 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 O -0.271 6.271 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.989 3.576 8.775 10.709 hybrid contribution 0.716 -0.251 -0.410 0.863 sum -4.273 3.325 8.365 9.964 Atomic orbital electron populations 1.21813 0.97125 1.00710 1.00984 1.21493 0.94312 0.96746 1.02845 1.21521 0.96730 0.96359 0.96587 1.21551 0.99824 0.99186 0.95006 1.21873 1.00996 1.00999 0.97298 1.22572 0.92419 0.91668 0.91450 0.92417 1.23125 0.98773 0.97743 0.99181 1.23330 0.97718 1.00297 0.97307 1.20469 0.90641 0.85818 0.87434 0.95831 1.21087 0.92807 1.17880 1.25584 0.92127 1.25056 0.95300 0.96582 0.95793 1.70030 1.17635 1.26526 1.35624 0.86725 0.82500 0.79384 0.79707 1.20159 1.21210 1.20179 1.88818 1.75912 1.36000 1.26376 0.93390 0.93098 0.93503 0.90095 0.92670 0.91556 0.92488 0.92310 0.93691 0.92342 0.92488 0.91893 0.92253 0.92270 0.91801 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 37.16 0.36 -1.81 16 2 C -0.12 -2.04 5.17 -26.73 -0.14 -2.18 16 3 C -0.09 -1.63 1.80 -90.62 -0.16 -1.79 16 4 C -0.12 -1.65 5.29 -26.73 -0.14 -1.79 16 5 C -0.15 -2.01 9.14 37.16 0.34 -1.67 16 6 C 0.08 1.57 2.70 -26.00 -0.07 1.50 16 7 H 0.06 1.14 6.38 -51.93 -0.33 0.81 16 8 C -0.15 -2.75 5.59 -24.78 -0.14 -2.89 16 9 C -0.15 -3.17 6.53 -24.49 -0.16 -3.33 16 10 C 0.21 5.58 3.27 -26.86 -0.09 5.50 16 11 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.54 -15.38 8.81 -34.44 -0.30 -15.68 16 13 H 0.06 1.68 7.77 -52.49 -0.41 1.28 16 14 C 0.08 2.26 5.42 -17.82 -0.10 2.17 16 15 N -0.86 -25.93 12.93 55.43 0.72 -25.22 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 O -0.35 -9.20 9.42 -35.23 -0.33 -9.53 16 21 H 0.05 0.61 6.49 -51.93 -0.34 0.28 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.73 7.51 -51.93 -0.39 1.34 16 25 H 0.05 0.91 6.18 -51.93 -0.32 0.59 16 26 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 27 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16 28 H 0.06 0.75 6.40 -51.93 -0.33 0.42 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.77 6.17 -51.93 -0.32 0.45 16 31 H 0.06 0.77 6.65 -51.93 -0.35 0.43 16 32 H 0.06 1.09 7.71 -51.93 -0.40 0.69 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 278.54 15.07 4.20 4.20 Total: -1.00 -30.05 278.54 -7.12 -37.17 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.08 Total: -1.33 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -0.60 Total: -21.97 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.72 Total: -25.22 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.33 Total: -9.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.05 -7.12 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.464 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds