Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47039 * 2 1 4 4 C 1.53004 * 109.47192 * 65.00415 * 3 2 1 5 5 C 1.52996 * 109.47111 * 63.59694 * 4 3 2 6 6 C 1.53000 * 109.46994 * 184.99814 * 3 2 1 7 7 H 1.08994 * 109.82700 * 297.48196 * 6 3 2 8 8 C 1.54389 * 109.82963 * 176.59126 * 6 3 2 9 9 C 1.55298 * 102.25416 * 219.13154 * 8 6 3 10 10 C 1.54946 * 100.94475 * 34.13728 * 9 8 6 11 11 H 1.09006 * 110.39746 * 82.50646 * 10 9 8 12 12 C 1.50699 * 110.31411 * 204.63995 * 10 9 8 13 13 H 1.07998 * 119.99772 * 357.16130 * 12 10 9 14 14 C 1.37875 * 119.99958 * 177.16801 * 12 10 9 15 15 N 1.31512 * 120.00425 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99720 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47229 * 59.99646 * 16 14 12 18 18 H 1.48501 * 109.46807 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46811 * 299.99649 * 16 14 12 20 20 O 1.43247 * 109.82869 * 58.46659 * 6 3 2 21 21 H 1.08997 * 109.46764 * 299.99509 * 1 2 3 22 22 H 1.08997 * 109.47037 * 60.00167 * 1 2 3 23 23 H 1.09004 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46977 * 240.00523 * 2 1 3 25 25 H 1.08999 * 109.47183 * 120.00596 * 2 1 3 26 26 H 1.09002 * 109.47501 * 305.00169 * 3 2 1 27 27 H 1.08996 * 109.47248 * 183.60181 * 4 3 2 28 28 H 1.09001 * 109.46792 * 303.59875 * 4 3 2 29 29 H 1.08999 * 109.47191 * 185.72665 * 5 4 3 30 30 H 1.09005 * 109.47435 * 305.72885 * 5 4 3 31 31 H 1.09000 * 109.47251 * 65.73048 * 5 4 3 32 32 H 1.08996 * 110.84847 * 337.32750 * 8 6 3 33 33 H 1.09003 * 110.84124 * 100.94317 * 8 6 3 34 34 H 1.09000 * 111.12536 * 152.05517 * 9 8 6 35 35 H 1.09000 * 111.12975 * 276.21911 * 9 8 6 36 36 H 0.97000 * 120.00428 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.3177 1.4241 2.4829 6 6 3.5648 1.4443 -0.1257 7 1 4.0074 0.9454 0.7364 8 6 4.0814 2.8966 -0.2126 9 6 5.2183 2.7797 -1.2642 10 6 4.6425 1.6868 -2.1995 11 1 3.9466 2.1264 -2.9141 12 6 5.7575 0.9783 -2.9247 13 1 6.7803 1.2953 -2.7839 14 6 5.4719 -0.0746 -3.7678 15 7 4.2265 -0.4609 -3.9389 16 14 6.8540 -0.9523 -4.6672 17 1 7.7992 -1.5306 -3.6785 18 1 6.2874 -2.0400 -5.5045 19 1 7.5742 0.0155 -5.5331 20 8 3.9539 0.7738 -1.3302 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6054 1.9816 -0.8418 27 1 1.9426 3.1719 1.2808 28 1 0.5535 2.0687 1.4280 29 1 1.9516 1.8446 3.4196 30 1 2.0917 0.3583 2.4503 31 1 3.3960 1.5691 2.4165 32 1 3.2967 3.5672 -0.5626 33 1 4.4748 3.2265 0.7489 34 1 5.3580 3.7197 -1.7978 35 1 6.1489 2.4505 -0.8018 36 1 4.0256 -1.2019 -4.5318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388170426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = -93.309317 kcal Electronic energy + Delta-G solvation = -15055.961982 eV Core-core repulsion = 12731.310110 eV Total energy + Delta-G solvation = -2324.651872 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40330 -37.37205 -34.58440 -32.83143 -31.86295 -30.39936 -27.74434 -25.54572 -24.44476 -22.43200 -21.83689 -19.82536 -18.56592 -17.32759 -16.79379 -16.29887 -16.11782 -15.35545 -14.52204 -14.39076 -13.94078 -13.70057 -13.65126 -13.61009 -13.14587 -12.80952 -12.76672 -12.40917 -12.28224 -12.17716 -12.11827 -11.78597 -11.60337 -11.31097 -11.17499 -10.98010 -10.92450 -10.65214 -9.66498 -8.13138 -6.34466 1.39070 1.42507 1.49987 2.40766 3.07628 3.62198 3.85026 3.94339 4.11394 4.22194 4.32705 4.38190 4.47178 4.58932 4.63618 4.73170 4.81704 4.85586 4.95218 4.97583 5.01968 5.11960 5.15964 5.19808 5.29015 5.35520 5.38409 5.47771 5.53377 5.67785 5.73379 5.77475 6.20598 6.63216 7.13306 7.42009 8.94285 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037920 B = 0.009068 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.220134 B = 3087.034948 C = 3563.473376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.088 4.088 4 C -0.110 4.110 5 C -0.154 4.154 6 C 0.065 3.935 7 H 0.063 0.937 8 C -0.136 4.136 9 C -0.142 4.142 10 C 0.203 3.797 11 H -0.014 1.014 12 C -0.561 4.561 13 H 0.064 0.936 14 C 0.022 3.978 15 N -0.900 5.900 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.263 1.263 20 O -0.388 6.388 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.055 0.945 24 H 0.028 0.972 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 4.719 10.643 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.107 4.107 4 C -0.147 4.147 5 C -0.211 4.211 6 C 0.007 3.993 7 H 0.081 0.919 8 C -0.173 4.173 9 C -0.180 4.180 10 C 0.147 3.853 11 H 0.004 0.996 12 C -0.598 4.598 13 H 0.082 0.918 14 C -0.180 4.180 15 N -0.538 5.538 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.188 1.188 20 O -0.308 6.308 21 H 0.093 0.907 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.873 4.392 10.507 12.387 hybrid contribution 0.654 -0.494 -0.911 1.226 sum -4.219 3.898 9.595 11.183 Atomic orbital electron populations 1.21755 0.94602 1.01670 1.01892 1.21427 0.96553 0.96518 1.00713 1.21455 0.94589 0.96430 0.98251 1.21507 1.01027 0.99334 0.92821 1.21867 1.00512 1.00741 0.97958 1.22901 0.94455 0.92689 0.89270 0.91924 1.23080 0.97806 0.96574 0.99889 1.23208 0.98452 0.99088 0.97215 1.20348 0.89635 0.87146 0.88153 0.99616 1.21550 0.93620 1.18315 1.26315 0.91819 1.25971 0.97876 0.97457 0.96716 1.70188 1.19904 1.27127 1.36539 0.85598 0.79183 0.78231 0.78493 1.19550 1.20783 1.18802 1.88733 1.76337 1.37428 1.28348 0.90698 0.93847 0.92628 0.95280 0.91714 0.93586 0.91313 0.90540 0.91148 0.92871 0.93205 0.90780 0.88777 0.90724 0.91845 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.67 71.98 0.70 -3.28 16 2 C -0.11 -4.04 5.17 30.59 0.16 -3.88 16 3 C -0.09 -3.04 1.80 -10.79 -0.02 -3.06 16 4 C -0.11 -2.72 5.29 30.59 0.16 -2.55 16 5 C -0.15 -3.48 9.14 71.98 0.66 -2.83 16 6 C 0.07 2.61 2.70 31.07 0.08 2.70 16 7 H 0.06 2.43 6.38 -2.39 -0.02 2.42 16 8 C -0.14 -4.73 5.59 31.86 0.18 -4.55 16 9 C -0.14 -5.97 6.53 32.05 0.21 -5.76 16 10 C 0.20 11.06 3.27 30.51 0.10 11.16 16 11 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 12 C -0.56 -32.97 8.81 25.60 0.23 -32.75 16 13 H 0.06 3.58 7.77 -2.91 -0.02 3.56 16 14 C 0.02 1.29 5.42 84.65 0.46 1.74 16 15 N -0.90 -56.30 12.93 21.45 0.28 -56.02 16 16 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 O -0.39 -21.09 9.42 -148.98 -1.40 -22.50 16 21 H 0.07 1.70 6.49 -2.39 -0.02 1.68 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.03 1.30 7.51 -2.38 -0.02 1.28 16 25 H 0.06 2.11 6.18 -2.39 -0.01 2.10 16 26 H 0.05 1.75 8.11 -2.39 -0.02 1.73 16 27 H 0.07 1.57 7.38 -2.39 -0.02 1.56 16 28 H 0.08 1.66 6.40 -2.39 -0.02 1.64 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.26 6.17 -2.38 -0.01 1.24 16 31 H 0.05 1.20 6.65 -2.39 -0.02 1.18 16 32 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 33 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.84 16 35 H 0.06 2.65 8.05 -2.39 -0.02 2.63 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.61 278.54 4.84 -62.77 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.03 Total: 11.48 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 2.91 Total: -43.06 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.40 Total: -22.50 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.61 4.84 -62.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.535 kcal (2) G-P(sol) polarization free energy of solvation -67.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds