Wall clock time and date at job start Mon Mar 30 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.46957 * 2 1 4 4 C 1.53002 * 109.47028 * 175.10359 * 3 2 1 5 5 C 1.53009 * 109.47189 * 294.36442 * 4 3 2 6 6 C 1.53002 * 109.47525 * 295.10205 * 3 2 1 7 7 H 1.08997 * 110.32898 * 57.74866 * 6 3 2 8 8 C 1.54473 * 110.37282 * 180.02562 * 6 3 2 9 9 C 1.54516 * 104.06031 * 142.81074 * 8 6 3 10 10 C 1.54477 * 104.06061 * 0.02562 * 9 8 6 11 11 H 1.09006 * 110.37467 * 94.96515 * 10 9 8 12 12 C 1.50702 * 110.36875 * 217.19018 * 10 9 8 13 13 H 1.07998 * 120.00410 * 358.45039 * 12 10 9 14 14 C 1.37876 * 119.99744 * 178.45533 * 12 10 9 15 15 N 1.31516 * 120.00268 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00065 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47103 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.46856 * 299.99548 * 16 14 12 19 19 H 1.48500 * 109.47368 * 59.99132 * 16 14 12 20 20 O 1.44420 * 104.90426 * 336.07595 * 10 9 8 21 21 H 1.09009 * 109.47108 * 186.99025 * 1 2 3 22 22 H 1.08999 * 109.47224 * 306.98768 * 1 2 3 23 23 H 1.08993 * 109.47417 * 66.99561 * 1 2 3 24 24 H 1.08999 * 109.46723 * 239.99890 * 2 1 3 25 25 H 1.08999 * 109.47045 * 120.00420 * 2 1 3 26 26 H 1.09007 * 109.47352 * 55.10421 * 3 2 1 27 27 H 1.09001 * 109.47223 * 54.36614 * 4 3 2 28 28 H 1.08999 * 109.47685 * 174.36878 * 4 3 2 29 29 H 1.09003 * 109.46884 * 59.44199 * 5 4 3 30 30 H 1.08998 * 109.46933 * 179.44102 * 5 4 3 31 31 H 1.08993 * 109.46822 * 299.44596 * 5 4 3 32 32 H 1.08996 * 110.51564 * 24.16813 * 8 6 3 33 33 H 1.09001 * 110.51303 * 261.45538 * 8 6 3 34 34 H 1.09003 * 110.51265 * 241.35448 * 9 8 6 35 35 H 1.08999 * 110.62334 * 118.70140 * 9 8 6 36 36 H 0.97000 * 120.00096 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5650 1.4442 0.1231 5 6 3.9670 0.8873 1.4904 6 6 1.6330 2.1273 -1.3062 7 1 0.5502 2.0986 -1.4275 8 6 2.1387 3.5868 -1.3284 9 6 2.5510 3.8189 -2.7994 10 6 2.2449 2.4724 -3.4919 11 1 1.2570 2.4980 -3.9517 12 6 3.2962 2.1638 -4.5266 13 1 4.0990 2.8635 -4.7062 14 6 3.2331 0.9881 -5.2441 15 7 2.2558 0.1358 -5.0252 16 14 4.5366 0.6052 -6.5262 17 1 4.2443 -0.7093 -7.1520 18 1 4.5309 1.6626 -7.5689 19 1 5.8712 0.5580 -5.8766 20 8 2.2806 1.4927 -2.4313 21 1 -0.3634 -1.0201 0.1251 22 1 -0.3633 0.6183 0.8209 23 1 -0.3634 0.4016 -0.9459 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6067 1.9810 0.8429 27 1 3.9937 0.8224 -0.6628 28 1 3.9365 2.4640 0.0228 29 1 3.5870 -0.1290 1.5947 30 1 5.0537 0.8793 1.5742 31 1 3.5464 1.5148 2.2761 32 1 2.9979 3.7034 -0.6681 33 1 1.3405 4.2720 -1.0428 34 1 3.6141 4.0502 -2.8661 35 1 1.9583 4.6192 -3.2425 36 1 2.2116 -0.6915 -5.5298 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388170429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:13 Heat of formation + Delta-G solvation = -75.670065 kcal Electronic energy + Delta-G solvation = -15123.320789 eV Core-core repulsion = 12799.433812 eV Total energy + Delta-G solvation = -2323.886977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.66244 -35.53058 -32.42744 -31.42276 -30.65305 -28.76539 -26.00524 -23.77729 -22.18341 -21.46772 -19.84941 -18.78600 -16.64141 -15.21096 -14.68236 -14.40013 -14.19817 -13.93669 -13.38470 -13.32467 -12.71960 -12.31518 -11.88445 -11.80650 -11.54640 -11.20852 -10.97988 -10.87102 -10.58461 -10.49350 -10.37302 -10.20361 -10.02369 -9.90738 -9.47910 -9.31964 -9.01529 -8.53616 -7.94793 -5.96993 -4.08927 3.34398 3.38830 3.41296 4.45348 5.05177 5.29985 5.31718 5.36389 5.58930 5.69175 5.76477 5.80460 5.85259 5.87746 6.01411 6.12515 6.19865 6.28125 6.29437 6.35161 6.45233 6.57999 6.65985 6.70468 6.78794 6.84290 6.85272 6.91404 7.02352 7.14748 7.57893 7.92816 8.29941 8.62995 9.03148 9.60973 11.10776 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.009592 C = 0.009234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.293830 B = 2918.451355 C = 3031.631555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.073 4.073 4 C -0.118 4.118 5 C -0.151 4.151 6 C 0.068 3.932 7 H 0.047 0.953 8 C -0.155 4.155 9 C -0.146 4.146 10 C 0.206 3.794 11 H 0.022 0.978 12 C -0.529 4.529 13 H 0.061 0.939 14 C 0.077 3.923 15 N -0.864 5.864 16 Si 0.890 3.110 17 H -0.287 1.287 18 H -0.276 1.276 19 H -0.276 1.276 20 O -0.341 6.341 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 2.203 9.899 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.208 4.208 6 C 0.009 3.991 7 H 0.065 0.935 8 C -0.193 4.193 9 C -0.184 4.184 10 C 0.151 3.849 11 H 0.040 0.960 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.128 4.128 15 N -0.500 5.500 16 Si 0.718 3.282 17 H -0.212 1.212 18 H -0.202 1.202 19 H -0.201 1.201 20 O -0.260 6.260 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.913 1.808 9.833 10.039 hybrid contribution 0.533 0.010 -0.675 0.860 sum -0.381 1.818 9.158 9.344 Atomic orbital electron populations 1.21780 0.96686 1.00618 1.01567 1.21532 0.95205 0.96649 1.02066 1.21157 0.95820 0.96097 0.96098 1.21529 0.95522 1.01544 0.96886 1.21851 1.00393 1.00905 0.97689 1.22795 0.96011 0.90855 0.89466 0.93498 1.23059 1.00291 0.97610 0.98301 1.23022 1.00827 1.00567 0.94004 1.20451 0.96447 0.82189 0.85852 0.96044 1.20999 1.11847 1.05384 1.18377 0.92068 1.25064 0.95306 0.96066 0.96397 1.70026 1.30707 1.09507 1.39773 0.86709 0.82360 0.77515 0.81660 1.21223 1.20175 1.20115 1.89484 1.77697 1.38749 1.20119 0.93511 0.93714 0.92222 0.90480 0.92922 0.91970 0.90575 0.92138 0.92814 0.93402 0.93581 0.91548 0.92834 0.92016 0.93095 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.50 37.16 0.35 -1.94 16 2 C -0.12 -1.97 5.23 -26.74 -0.14 -2.11 16 3 C -0.07 -1.25 1.77 -90.62 -0.16 -1.41 16 4 C -0.12 -1.98 4.98 -26.73 -0.13 -2.12 16 5 C -0.15 -2.06 9.70 37.16 0.36 -1.70 16 6 C 0.07 1.37 2.77 -25.96 -0.07 1.30 16 7 H 0.05 0.96 6.68 -51.93 -0.35 0.61 16 8 C -0.15 -2.88 6.45 -25.16 -0.16 -3.04 16 9 C -0.15 -3.15 6.62 -25.16 -0.17 -3.31 16 10 C 0.21 5.42 3.08 -27.11 -0.08 5.34 16 11 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 12 C -0.53 -15.07 8.78 -34.44 -0.30 -15.37 16 13 H 0.06 1.69 7.58 -52.49 -0.40 1.30 16 14 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 15 N -0.86 -25.86 13.00 55.43 0.72 -25.14 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 O -0.34 -8.77 9.47 -35.23 -0.33 -9.10 16 21 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 1.02 6.88 -51.93 -0.36 0.66 16 24 H 0.08 1.55 7.73 -51.93 -0.40 1.15 16 25 H 0.05 0.78 6.36 -51.93 -0.33 0.45 16 26 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.08 1.51 7.80 -51.93 -0.41 1.11 16 28 H 0.06 1.02 5.94 -51.93 -0.31 0.71 16 29 H 0.05 0.71 6.46 -51.93 -0.34 0.38 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.15 5.74 -51.93 -0.30 0.86 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.33 7.72 -51.93 -0.40 0.93 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -29.72 279.94 -7.12 -36.84 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.10 Total: -1.21 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -0.60 Total: -22.24 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.72 Total: -25.14 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.33 Total: -9.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.72 -7.12 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.830 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds