Wall clock time and date at job start Mon Mar 30 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.46957 * 2 1 4 4 C 1.53002 * 109.47028 * 175.10359 * 3 2 1 5 5 C 1.53009 * 109.47189 * 294.36442 * 4 3 2 6 6 C 1.53002 * 109.47525 * 295.10205 * 3 2 1 7 7 H 1.08997 * 110.32898 * 57.74866 * 6 3 2 8 8 C 1.54473 * 110.37282 * 180.02562 * 6 3 2 9 9 C 1.54516 * 104.06031 * 142.81074 * 8 6 3 10 10 C 1.54477 * 104.06061 * 0.02562 * 9 8 6 11 11 H 1.09006 * 110.37467 * 94.96515 * 10 9 8 12 12 C 1.50702 * 110.36875 * 217.19018 * 10 9 8 13 13 H 1.07998 * 120.00410 * 358.45039 * 12 10 9 14 14 C 1.37876 * 119.99744 * 178.45533 * 12 10 9 15 15 N 1.31516 * 120.00268 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00065 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47103 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.46856 * 299.99548 * 16 14 12 19 19 H 1.48500 * 109.47368 * 59.99132 * 16 14 12 20 20 O 1.44420 * 104.90426 * 336.07595 * 10 9 8 21 21 H 1.09009 * 109.47108 * 186.99025 * 1 2 3 22 22 H 1.08999 * 109.47224 * 306.98768 * 1 2 3 23 23 H 1.08993 * 109.47417 * 66.99561 * 1 2 3 24 24 H 1.08999 * 109.46723 * 239.99890 * 2 1 3 25 25 H 1.08999 * 109.47045 * 120.00420 * 2 1 3 26 26 H 1.09007 * 109.47352 * 55.10421 * 3 2 1 27 27 H 1.09001 * 109.47223 * 54.36614 * 4 3 2 28 28 H 1.08999 * 109.47685 * 174.36878 * 4 3 2 29 29 H 1.09003 * 109.46884 * 59.44199 * 5 4 3 30 30 H 1.08998 * 109.46933 * 179.44102 * 5 4 3 31 31 H 1.08993 * 109.46822 * 299.44596 * 5 4 3 32 32 H 1.08996 * 110.51564 * 24.16813 * 8 6 3 33 33 H 1.09001 * 110.51303 * 261.45538 * 8 6 3 34 34 H 1.09003 * 110.51265 * 241.35448 * 9 8 6 35 35 H 1.08999 * 110.62334 * 118.70140 * 9 8 6 36 36 H 0.97000 * 120.00096 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5650 1.4442 0.1231 5 6 3.9670 0.8873 1.4904 6 6 1.6330 2.1273 -1.3062 7 1 0.5502 2.0986 -1.4275 8 6 2.1387 3.5868 -1.3284 9 6 2.5510 3.8189 -2.7994 10 6 2.2449 2.4724 -3.4919 11 1 1.2570 2.4980 -3.9517 12 6 3.2962 2.1638 -4.5266 13 1 4.0990 2.8635 -4.7062 14 6 3.2331 0.9881 -5.2441 15 7 2.2558 0.1358 -5.0252 16 14 4.5366 0.6052 -6.5262 17 1 4.2443 -0.7093 -7.1520 18 1 4.5309 1.6626 -7.5689 19 1 5.8712 0.5580 -5.8766 20 8 2.2806 1.4927 -2.4313 21 1 -0.3634 -1.0201 0.1251 22 1 -0.3633 0.6183 0.8209 23 1 -0.3634 0.4016 -0.9459 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6067 1.9810 0.8429 27 1 3.9937 0.8224 -0.6628 28 1 3.9365 2.4640 0.0228 29 1 3.5870 -0.1290 1.5947 30 1 5.0537 0.8793 1.5742 31 1 3.5464 1.5148 2.2761 32 1 2.9979 3.7034 -0.6681 33 1 1.3405 4.2720 -1.0428 34 1 3.6141 4.0502 -2.8661 35 1 1.9583 4.6192 -3.2425 36 1 2.2116 -0.6915 -5.5298 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388170429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:13 Heat of formation + Delta-G solvation = -93.002959 kcal Electronic energy + Delta-G solvation = -15124.072400 eV Core-core repulsion = 12799.433812 eV Total energy + Delta-G solvation = -2324.638588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33404 -37.07767 -34.55620 -32.80138 -32.29279 -30.51228 -27.70360 -25.48070 -23.46438 -23.18829 -21.62420 -20.25153 -18.75824 -16.93603 -16.53989 -16.01142 -15.85572 -15.44713 -14.85802 -14.75992 -14.33815 -14.05481 -13.64348 -13.14324 -12.92839 -12.79491 -12.56023 -12.43693 -12.38737 -12.16533 -11.94043 -11.73633 -11.64194 -11.45271 -10.97879 -10.93795 -10.89759 -10.66473 -9.89972 -8.15366 -6.35308 1.38518 1.41917 1.49295 2.39869 3.07494 3.67179 3.87973 3.95732 4.11648 4.22683 4.34374 4.39597 4.49528 4.58261 4.66526 4.71801 4.78885 4.87480 4.96569 5.01211 5.06791 5.07735 5.14032 5.23722 5.32048 5.38332 5.41548 5.49953 5.52184 5.62155 5.74029 5.74145 6.18849 6.58928 6.97957 7.39528 8.92809 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.009592 C = 0.009234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.293830 B = 2918.451355 C = 3031.631555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.069 4.069 4 C -0.115 4.115 5 C -0.144 4.144 6 C 0.056 3.944 7 H 0.041 0.959 8 C -0.144 4.144 9 C -0.140 4.140 10 C 0.197 3.803 11 H -0.016 1.016 12 C -0.552 4.552 13 H 0.063 0.937 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.960 3.040 17 H -0.282 1.282 18 H -0.264 1.264 19 H -0.270 1.270 20 O -0.372 6.372 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.030 0.970 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 3.054 11.723 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.087 4.087 4 C -0.152 4.152 5 C -0.201 4.201 6 C -0.002 4.002 7 H 0.058 0.942 8 C -0.181 4.181 9 C -0.178 4.178 10 C 0.141 3.859 11 H 0.002 0.998 12 C -0.589 4.589 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.539 5.539 16 Si 0.785 3.215 17 H -0.208 1.208 18 H -0.188 1.188 19 H -0.195 1.195 20 O -0.292 6.292 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.367 2.675 11.663 11.972 hybrid contribution 0.310 -0.246 -1.214 1.277 sum -0.058 2.429 10.449 10.728 Atomic orbital electron populations 1.21744 0.95502 1.01833 1.01158 1.21491 0.96254 0.96471 1.00990 1.21203 0.96145 0.96145 0.95189 1.21472 0.95159 1.00936 0.97674 1.21787 1.01126 1.01246 0.95932 1.23106 0.95489 0.92247 0.89353 0.94160 1.23023 1.01876 0.96779 0.96414 1.22906 1.00957 0.98196 0.95769 1.20339 0.94008 0.85015 0.86509 0.99815 1.21432 1.12296 1.05682 1.19495 0.91877 1.25958 0.97513 0.95879 0.98647 1.70176 1.32721 1.09947 1.41104 0.85600 0.79341 0.77600 0.79004 1.20774 1.18819 1.19546 1.89414 1.78418 1.39817 1.21535 0.92346 0.90910 0.94951 0.95140 0.90327 0.88503 0.94854 0.91994 0.92570 0.92642 0.91209 0.89814 0.89788 0.92305 0.91591 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.50 71.98 0.68 -3.60 16 2 C -0.11 -3.77 5.23 30.59 0.16 -3.61 16 3 C -0.07 -2.22 1.77 -10.80 -0.02 -2.24 16 4 C -0.11 -3.73 4.98 30.60 0.15 -3.58 16 5 C -0.14 -3.49 9.70 71.99 0.70 -2.80 16 6 C 0.06 2.27 2.77 31.10 0.09 2.36 16 7 H 0.04 1.66 6.68 -2.39 -0.02 1.64 16 8 C -0.14 -5.05 6.45 31.61 0.20 -4.85 16 9 C -0.14 -5.98 6.62 31.61 0.21 -5.77 16 10 C 0.20 10.74 3.08 30.35 0.09 10.84 16 11 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 12 C -0.55 -32.35 8.78 25.60 0.22 -32.12 16 13 H 0.06 3.55 7.58 -2.91 -0.02 3.53 16 14 C 0.02 1.29 5.43 84.65 0.46 1.74 16 15 N -0.90 -56.14 13.00 21.45 0.28 -55.86 16 16 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 O -0.37 -19.86 9.47 -148.98 -1.41 -21.27 16 21 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.03 1.11 6.88 -2.39 -0.02 1.09 16 24 H 0.03 1.27 7.73 -2.39 -0.02 1.25 16 25 H 0.08 2.16 6.36 -2.39 -0.02 2.14 16 26 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 27 H 0.03 1.35 7.80 -2.39 -0.02 1.33 16 28 H 0.06 1.96 5.94 -2.39 -0.01 1.94 16 29 H 0.06 1.33 6.46 -2.39 -0.02 1.31 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 2.66 5.74 -2.39 -0.01 2.65 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.51 7.72 -2.39 -0.02 2.49 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -67.08 279.94 4.87 -62.20 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.03 Total: 11.27 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 2.95 Total: -43.63 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.28 Total: -55.86 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -1.41 Total: -21.27 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.08 4.87 -62.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.800 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds