Wall clock time and date at job start Mon Mar 30 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00174 * 2 1 4 4 C 1.50703 * 112.85342 * 301.06855 * 3 2 1 5 5 O 1.21279 * 119.99784 * 143.24644 * 4 3 2 6 6 N 1.34773 * 119.99829 * 323.25433 * 4 3 2 7 7 C 1.46497 * 120.00052 * 175.00809 * 6 4 3 8 8 C 1.50704 * 109.47153 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00049 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99688 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99758 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00276 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47421 * 89.99853 * 12 10 8 14 14 H 1.48500 * 109.47079 * 209.99604 * 12 10 8 15 15 H 1.48497 * 109.47093 * 329.99798 * 12 10 8 16 16 C 1.53781 * 113.61350 * 169.87279 * 3 2 1 17 17 C 1.53958 * 87.02225 * 220.04786 * 16 3 2 18 18 C 1.53779 * 113.61486 * 72.26799 * 3 2 1 19 19 H 1.09000 * 109.47106 * 295.17540 * 1 2 3 20 20 H 1.08995 * 109.47255 * 175.16712 * 1 2 3 21 21 H 1.09000 * 109.46419 * 55.16957 * 1 2 3 22 22 H 1.00898 * 111.00006 * 236.04682 * 2 1 3 23 23 H 0.97004 * 119.99883 * 355.00206 * 6 4 3 24 24 H 1.09000 * 109.46798 * 299.99378 * 7 6 4 25 25 H 1.08998 * 109.47170 * 59.99412 * 7 6 4 26 26 H 0.96992 * 120.00415 * 180.02562 * 11 10 8 27 27 H 1.09002 * 113.61625 * 334.56984 * 16 3 2 28 28 H 1.08997 * 113.61492 * 105.46969 * 16 3 2 29 29 H 1.09000 * 113.54064 * 270.81502 * 17 16 3 30 30 H 1.08993 * 113.74251 * 139.94265 * 17 16 3 31 31 H 1.09003 * 113.61631 * 254.53014 * 18 3 2 32 32 H 1.09003 * 113.61329 * 25.34832 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5362 2.1746 -1.1895 5 8 1.2842 3.3543 -1.0638 6 7 1.4053 1.5820 -2.3929 7 6 0.8554 2.3337 -3.5236 8 6 0.8160 1.4493 -4.7432 9 1 1.1661 0.4295 -4.6823 10 6 0.3331 1.9422 -5.9369 11 7 0.2983 1.1703 -7.0011 12 14 -0.2717 3.7064 -6.0426 13 1 0.8571 4.5951 -6.4182 14 1 -1.3402 3.8027 -7.0693 15 1 -0.8129 4.1239 -4.7243 16 6 3.5112 1.4493 0.2478 17 6 3.2232 2.6807 1.1258 18 6 1.8157 2.1003 1.3421 19 1 -0.3633 0.4372 0.9300 20 1 -0.3633 -1.0240 -0.0866 21 1 -0.3632 0.5870 -0.8436 22 1 1.8306 -0.5261 -0.7814 23 1 1.6754 0.6577 -2.5103 24 1 -0.1544 2.6657 -3.2825 25 1 1.4848 3.2007 -3.7241 26 1 -0.0411 1.5171 -7.8410 27 1 3.9071 0.5995 0.8038 28 1 4.0890 1.6763 -0.6482 29 1 3.2279 3.6202 0.5732 30 1 3.8231 2.7214 2.0349 31 1 1.0265 2.8521 1.3284 32 1 1.7456 1.4286 2.1978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393544052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:20 Heat of formation + Delta-G solvation = -42.491947 kcal Electronic energy + Delta-G solvation = -14520.377727 eV Core-core repulsion = 12094.389117 eV Total energy + Delta-G solvation = -2425.988609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78047 -38.57158 -36.43500 -35.10278 -34.22673 -30.23757 -27.54334 -26.57255 -25.10517 -23.89425 -22.25745 -20.54363 -18.82641 -18.14041 -17.28382 -16.84922 -16.38557 -16.13839 -15.70729 -15.40589 -14.72502 -14.46171 -14.17456 -14.02409 -13.30323 -13.10299 -13.00042 -12.79815 -12.61770 -12.03190 -11.97647 -11.76098 -11.68002 -11.30468 -11.12580 -10.97807 -10.06114 -9.58230 -8.45773 -6.53499 1.27332 1.29776 1.41597 1.52006 2.21599 2.26202 2.89075 3.13685 3.51708 3.65765 3.74508 3.89315 4.32600 4.50060 4.55389 4.68846 4.80727 4.88355 4.91636 4.97378 5.01082 5.05068 5.14054 5.19393 5.36135 5.43590 5.77355 6.02219 6.22574 6.46241 6.70431 7.07714 7.24970 8.68821 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043972 B = 0.008210 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.612378 B = 3409.802626 C = 3652.402480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.650 5.650 3 C 0.056 3.944 4 C 0.493 3.507 5 O -0.588 6.588 6 N -0.704 5.704 7 C 0.234 3.766 8 C -0.548 4.548 9 H 0.060 0.940 10 C 0.029 3.971 11 N -0.927 5.927 12 Si 0.936 3.064 13 H -0.265 1.265 14 H -0.270 1.270 15 H -0.264 1.264 16 C -0.104 4.104 17 C -0.136 4.136 18 C -0.100 4.100 19 H 0.072 0.928 20 H 0.091 0.909 21 H 0.003 0.997 22 H 0.347 0.653 23 H 0.404 0.596 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.274 0.726 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -1.596 15.547 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.281 5.281 3 C -0.040 4.040 4 C 0.278 3.722 5 O -0.468 6.468 6 N -0.353 5.353 7 C 0.110 3.890 8 C -0.586 4.586 9 H 0.078 0.922 10 C -0.172 4.172 11 N -0.566 5.566 12 Si 0.760 3.240 13 H -0.190 1.190 14 H -0.195 1.195 15 H -0.189 1.189 16 C -0.142 4.142 17 C -0.174 4.174 18 C -0.138 4.138 19 H 0.091 0.909 20 H 0.109 0.891 21 H 0.021 0.979 22 H 0.166 0.834 23 H 0.239 0.761 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.842 -0.861 16.088 16.563 hybrid contribution -0.656 0.613 -1.870 2.074 sum 3.186 -0.249 14.217 14.572 Atomic orbital electron populations 1.22302 0.87451 1.02795 1.00455 1.60909 1.08284 1.09888 1.49003 1.22752 0.99619 0.88683 0.92897 1.21813 0.77033 0.88073 0.85274 1.90603 1.52549 1.17942 1.85705 1.46054 1.63127 1.16494 1.09630 1.19083 0.92989 0.92296 0.84610 1.21233 1.44109 0.99472 0.93797 0.92234 1.25574 0.94783 1.01832 0.94970 1.69968 1.46685 1.38260 1.01650 0.85875 0.79239 0.80150 0.78728 1.18954 1.19469 1.18861 1.23017 0.90465 1.00219 1.00518 1.22751 0.96753 0.96912 1.00941 1.22836 0.98056 0.98393 0.94500 0.90905 0.89081 0.97870 0.83389 0.76110 0.97261 0.97272 0.91711 0.85459 0.92038 0.92118 0.87959 0.92912 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.35 127.69 1.32 1.81 16 2 N -0.65 -15.47 6.56 -494.12 -3.24 -18.71 16 3 C 0.06 1.54 1.04 3.31 0.00 1.55 16 4 C 0.49 19.04 5.73 87.66 0.50 19.54 16 5 O -0.59 -27.24 15.39 -3.03 -0.05 -27.29 16 6 N -0.70 -28.91 4.99 -466.79 -2.33 -31.24 16 7 C 0.23 11.72 4.50 85.63 0.39 12.10 16 8 C -0.55 -30.48 9.83 25.60 0.25 -30.23 16 9 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 10 C 0.03 1.66 5.47 84.65 0.46 2.12 16 11 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 12 Si 0.94 44.38 27.47 68.60 1.88 46.27 16 13 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 15 H -0.26 -12.53 6.54 99.48 0.65 -11.87 16 16 C -0.10 -2.35 7.47 31.18 0.23 -2.11 16 17 C -0.14 -3.12 7.70 31.18 0.24 -2.88 16 18 C -0.10 -2.47 6.71 31.12 0.21 -2.26 16 19 H 0.07 1.70 7.85 -2.39 -0.02 1.68 16 20 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.00 0.08 6.73 -2.39 -0.02 0.07 16 22 H 0.35 7.77 7.90 -89.70 -0.71 7.06 16 23 H 0.40 14.70 7.26 -92.71 -0.67 14.03 16 24 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 25 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 26 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 29 H 0.06 1.73 7.65 -2.39 -0.02 1.72 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.55 7.62 -2.39 -0.02 1.53 16 32 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -66.58 264.53 -0.14 -66.72 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.31 Total: 19.58 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 3.61 Total: -0.37 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -5.27 Total: -104.90 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -66.58 -0.14 -66.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393544052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.227 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds