Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 C 1.53008 * 109.47023 * 119.99790 * 2 1 3 5 5 C 1.53003 * 109.46856 * 174.99943 * 4 2 1 6 6 C 1.53000 * 109.46771 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.33182 * 304.20066 * 6 5 4 8 8 C 1.54798 * 110.39957 * 181.85593 * 6 5 4 9 9 C 1.54514 * 103.90974 * 217.06783 * 8 6 5 10 10 C 1.54480 * 104.18308 * 0.10211 * 9 8 6 11 11 H 1.09005 * 110.36995 * 264.96309 * 10 9 8 12 12 C 1.50699 * 110.37299 * 142.74020 * 10 9 8 13 13 H 1.08002 * 120.00008 * 0.02562 * 12 10 9 14 14 C 1.37873 * 120.00095 * 179.97438 * 12 10 9 15 15 N 1.31520 * 120.00130 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00067 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47355 * 90.00291 * 16 14 12 18 18 H 1.48499 * 109.47041 * 210.00387 * 16 14 12 19 19 H 1.48501 * 109.47211 * 330.00285 * 16 14 12 20 20 O 1.44416 * 110.37663 * 66.45628 * 6 5 4 21 21 H 1.09001 * 109.47242 * 300.00091 * 1 2 3 22 22 H 1.08994 * 109.47164 * 60.00039 * 1 2 3 23 23 H 1.09005 * 109.46890 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47242 * 239.99909 * 2 1 3 25 25 H 1.08994 * 109.47312 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46679 * 300.00059 * 3 2 1 27 27 H 1.09001 * 109.47051 * 59.99792 * 3 2 1 28 28 H 1.08997 * 109.47096 * 55.00491 * 4 2 1 29 29 H 1.08990 * 109.47170 * 295.00152 * 4 2 1 30 30 H 1.08997 * 109.46821 * 60.00379 * 5 4 2 31 31 H 1.08996 * 109.47020 * 300.00252 * 5 4 2 32 32 H 1.09004 * 110.56077 * 98.48786 * 8 6 5 33 33 H 1.09004 * 110.61235 * 335.67516 * 8 6 5 34 34 H 1.09002 * 110.51267 * 241.38657 * 9 8 6 35 35 H 1.08994 * 110.51194 * 118.81318 * 9 8 6 36 36 H 0.96997 * 120.00137 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 6 4.0748 -1.5528 2.4370 7 1 3.7308 -1.0421 3.3365 8 6 5.6205 -1.6347 2.4196 9 6 5.9257 -3.0230 3.0254 10 6 4.5330 -3.6158 3.3341 11 1 4.2602 -3.4233 4.3717 12 6 4.5197 -5.0967 3.0553 13 1 5.4114 -5.5859 2.6922 14 6 3.3693 -5.8273 3.2649 15 7 2.2835 -5.2317 3.7076 16 14 3.3530 -7.6631 2.9200 17 1 3.7482 -8.4008 4.1467 18 1 1.9869 -8.0779 2.5115 19 1 4.3109 -7.9701 1.8276 20 8 3.6324 -2.9276 2.4391 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.9994 0.1675 1.1421 31 1 3.8532 -1.3939 0.3003 32 1 6.0526 -0.8459 3.0355 33 1 5.9966 -1.5725 1.3984 34 1 6.5087 -2.9205 3.9407 35 1 6.4548 -3.6462 2.3046 36 1 1.4741 -5.7456 3.8546 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394123582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -82.595499 kcal Electronic energy + Delta-G solvation = -14584.193962 eV Core-core repulsion = 12260.006675 eV Total energy + Delta-G solvation = -2324.187286 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.25635 -36.32521 -32.74202 -31.10497 -30.69893 -27.50501 -27.00137 -24.70828 -22.34423 -20.34470 -19.83466 -19.45292 -16.61289 -15.28233 -15.04676 -14.55119 -14.11555 -14.06986 -13.56597 -13.15559 -12.48828 -12.42393 -12.11978 -11.82740 -11.60500 -11.42354 -11.05148 -10.93601 -10.84486 -10.55402 -10.34351 -10.33931 -10.06160 -9.93035 -9.60864 -9.52178 -9.02827 -8.55792 -7.99678 -5.98262 -4.10277 3.32563 3.39114 3.42827 4.44809 5.01606 5.05452 5.16238 5.21873 5.51382 5.56745 5.66174 5.74222 5.79848 5.88527 5.94687 5.97047 6.06434 6.12113 6.14208 6.25240 6.39635 6.40502 6.48379 6.55105 6.71324 6.76319 6.78953 6.87490 6.98234 7.00239 7.56744 7.92087 8.28421 8.62431 9.01989 9.59903 11.09795 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031078 B = 0.008115 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.747345 B = 3449.709636 C = 4133.228608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.106 4.106 6 C 0.064 3.936 7 H 0.045 0.955 8 C -0.150 4.150 9 C -0.147 4.147 10 C 0.205 3.795 11 H 0.024 0.976 12 C -0.528 4.528 13 H 0.062 0.938 14 C 0.076 3.924 15 N -0.865 5.865 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.348 6.348 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 10.239 -4.938 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.148 4.148 5 C -0.143 4.143 6 C 0.004 3.996 7 H 0.063 0.937 8 C -0.188 4.188 9 C -0.185 4.185 10 C 0.149 3.851 11 H 0.042 0.958 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.130 4.130 15 N -0.502 5.502 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.267 6.267 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.031 10.122 -5.002 11.290 hybrid contribution 0.126 -0.851 -0.021 0.860 sum 0.095 9.271 -5.023 10.545 Atomic orbital electron populations 1.21828 0.95715 1.01796 1.00983 1.21153 0.95378 0.95958 0.99217 1.21885 1.01128 0.96369 1.01008 1.21570 0.95684 1.01263 0.96272 1.21616 0.95736 0.98832 0.98154 1.22830 0.92016 0.88572 0.96149 0.93680 1.23008 0.97425 0.97942 1.00411 1.23034 1.01135 0.94880 0.99477 1.20484 0.82477 0.91937 0.90153 0.95783 1.21048 0.97693 0.91034 1.46774 0.91959 1.25087 0.95525 0.98418 0.93928 1.70036 1.01309 1.35658 1.43152 0.86612 0.77419 0.85380 0.78645 1.20550 1.21095 1.19763 1.89474 1.54909 1.15233 1.67128 0.92944 0.93361 0.92539 0.91516 0.92544 0.93433 0.92969 0.90568 0.92663 0.92193 0.91856 0.92634 0.92107 0.92972 0.91956 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 37.16 0.34 -1.49 16 2 C -0.10 -1.34 2.92 -90.62 -0.26 -1.60 16 3 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 4 C -0.11 -1.84 4.60 -26.73 -0.12 -1.96 16 5 C -0.11 -1.82 4.62 -26.73 -0.12 -1.94 16 6 C 0.06 1.31 3.28 -25.78 -0.08 1.22 16 7 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 8 C -0.15 -2.81 6.65 -24.99 -0.17 -2.98 16 9 C -0.15 -3.20 6.61 -25.16 -0.17 -3.37 16 10 C 0.21 5.48 3.06 -27.11 -0.08 5.40 16 11 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 12 C -0.53 -15.23 8.77 -34.44 -0.30 -15.53 16 13 H 0.06 1.74 7.56 -52.49 -0.40 1.35 16 14 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 15 N -0.87 -26.13 13.07 55.43 0.72 -25.41 16 16 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 O -0.35 -9.23 10.39 -35.23 -0.37 -9.60 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.06 7.88 -51.93 -0.41 0.65 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.36 7.70 -51.93 -0.40 0.96 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -30.41 288.61 -7.56 -37.97 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.51 Total: -2.50 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.74 Total: -21.54 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.72 Total: -25.41 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.37 Total: -9.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.41 -7.56 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394123582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.630 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds