Wall clock time and date at job start Mon Mar 30 2020 03:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 C 1.53008 * 109.47023 * 119.99790 * 2 1 3 5 5 C 1.53003 * 109.46856 * 174.99943 * 4 2 1 6 6 C 1.53000 * 109.46771 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.33182 * 304.20066 * 6 5 4 8 8 C 1.54798 * 110.39957 * 181.85593 * 6 5 4 9 9 C 1.54514 * 103.90974 * 217.06783 * 8 6 5 10 10 C 1.54480 * 104.18308 * 0.10211 * 9 8 6 11 11 H 1.09005 * 110.36995 * 264.96309 * 10 9 8 12 12 C 1.50699 * 110.37299 * 142.74020 * 10 9 8 13 13 H 1.08002 * 120.00008 * 0.02562 * 12 10 9 14 14 C 1.37873 * 120.00095 * 179.97438 * 12 10 9 15 15 N 1.31520 * 120.00130 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00067 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47355 * 90.00291 * 16 14 12 18 18 H 1.48499 * 109.47041 * 210.00387 * 16 14 12 19 19 H 1.48501 * 109.47211 * 330.00285 * 16 14 12 20 20 O 1.44416 * 110.37663 * 66.45628 * 6 5 4 21 21 H 1.09001 * 109.47242 * 300.00091 * 1 2 3 22 22 H 1.08994 * 109.47164 * 60.00039 * 1 2 3 23 23 H 1.09005 * 109.46890 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47242 * 239.99909 * 2 1 3 25 25 H 1.08994 * 109.47312 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46679 * 300.00059 * 3 2 1 27 27 H 1.09001 * 109.47051 * 59.99792 * 3 2 1 28 28 H 1.08997 * 109.47096 * 55.00491 * 4 2 1 29 29 H 1.08990 * 109.47170 * 295.00152 * 4 2 1 30 30 H 1.08997 * 109.46821 * 60.00379 * 5 4 2 31 31 H 1.08996 * 109.47020 * 300.00252 * 5 4 2 32 32 H 1.09004 * 110.56077 * 98.48786 * 8 6 5 33 33 H 1.09004 * 110.61235 * 335.67516 * 8 6 5 34 34 H 1.09002 * 110.51267 * 241.38657 * 9 8 6 35 35 H 1.08994 * 110.51194 * 118.81318 * 9 8 6 36 36 H 0.96997 * 120.00137 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 6 4.0748 -1.5528 2.4370 7 1 3.7308 -1.0421 3.3365 8 6 5.6205 -1.6347 2.4196 9 6 5.9257 -3.0230 3.0254 10 6 4.5330 -3.6158 3.3341 11 1 4.2602 -3.4233 4.3717 12 6 4.5197 -5.0967 3.0553 13 1 5.4114 -5.5859 2.6922 14 6 3.3693 -5.8273 3.2649 15 7 2.2835 -5.2317 3.7076 16 14 3.3530 -7.6631 2.9200 17 1 3.7482 -8.4008 4.1467 18 1 1.9869 -8.0779 2.5115 19 1 4.3109 -7.9701 1.8276 20 8 3.6324 -2.9276 2.4391 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.9994 0.1675 1.1421 31 1 3.8532 -1.3939 0.3003 32 1 6.0526 -0.8459 3.0355 33 1 5.9966 -1.5725 1.3984 34 1 6.5087 -2.9205 3.9407 35 1 6.4548 -3.6462 2.3046 36 1 1.4741 -5.7456 3.8546 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394123582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:16 Heat of formation + Delta-G solvation = -100.296569 kcal Electronic energy + Delta-G solvation = -14584.961538 eV Core-core repulsion = 12260.006675 eV Total energy + Delta-G solvation = -2324.954862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00780 -37.58838 -34.81243 -32.74341 -32.43929 -29.28938 -27.96359 -26.50816 -23.97738 -22.11289 -21.42797 -20.70388 -18.75740 -16.96959 -16.64360 -16.34057 -15.68805 -15.65986 -14.82568 -14.59734 -14.19062 -14.02625 -13.54991 -13.29047 -12.98279 -12.84180 -12.75930 -12.41679 -12.30204 -12.17972 -11.97140 -11.91498 -11.45987 -11.38152 -11.30916 -11.00799 -10.96491 -10.70972 -10.00837 -8.17600 -6.38082 1.38660 1.40906 1.51707 2.39299 3.04911 3.66678 3.76631 4.02978 4.09706 4.15501 4.21773 4.32793 4.41271 4.61482 4.68674 4.71088 4.84133 4.86112 4.92248 4.99299 5.03053 5.04616 5.11628 5.19953 5.23928 5.29948 5.40351 5.42476 5.50617 5.57303 5.62589 5.72437 6.15834 6.56990 6.94013 7.37281 8.91184 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031078 B = 0.008115 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.747345 B = 3449.709636 C = 4133.228608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.107 4.107 5 C -0.097 4.097 6 C 0.050 3.950 7 H 0.040 0.960 8 C -0.138 4.138 9 C -0.142 4.142 10 C 0.195 3.805 11 H -0.012 1.012 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.019 3.981 15 N -0.905 5.905 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.265 1.265 20 O -0.384 6.384 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 11.322 -6.078 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.008 4.008 7 H 0.058 0.942 8 C -0.175 4.175 9 C -0.180 4.180 10 C 0.139 3.861 11 H 0.006 0.994 12 C -0.590 4.590 13 H 0.083 0.917 14 C -0.182 4.182 15 N -0.542 5.542 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.189 1.189 20 O -0.304 6.304 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.964 11.215 -6.143 12.823 hybrid contribution -0.192 -1.130 0.369 1.204 sum 0.772 10.084 -5.774 11.646 Atomic orbital electron populations 1.21828 0.95096 1.01152 1.02222 1.21120 0.95983 0.97154 0.97140 1.21846 1.01412 0.94528 1.02137 1.21508 0.95572 0.99186 0.98208 1.21600 0.95872 1.00038 0.95920 1.23180 0.93794 0.86105 0.97745 0.94182 1.22974 0.95690 0.96911 1.01955 1.22923 0.98166 0.96392 1.00489 1.20401 0.85390 0.91834 0.88475 0.99438 1.21486 0.97999 0.92749 1.46737 0.91708 1.26019 0.95038 1.03625 0.93567 1.70182 1.01975 1.37650 1.44425 0.85475 0.77528 0.79124 0.78996 1.19222 1.20818 1.18887 1.89392 1.55915 1.18411 1.66723 0.92642 0.91162 0.94186 0.91776 0.92031 0.91619 0.92581 0.95083 0.92637 0.88476 0.92573 0.89333 0.90260 0.91289 0.92181 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.19 71.98 0.66 -2.85 16 2 C -0.10 -2.47 2.92 -10.79 -0.03 -2.50 16 3 C -0.14 -2.86 8.95 71.98 0.64 -2.22 16 4 C -0.11 -3.58 4.60 30.60 0.14 -3.44 16 5 C -0.10 -3.20 4.62 30.60 0.14 -3.06 16 6 C 0.05 2.05 3.28 31.21 0.10 2.15 16 7 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 8 C -0.14 -4.85 6.65 31.72 0.21 -4.64 16 9 C -0.14 -6.06 6.61 31.61 0.21 -5.85 16 10 C 0.19 10.72 3.06 30.35 0.09 10.81 16 11 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 12 C -0.55 -32.59 8.77 25.60 0.22 -32.36 16 13 H 0.06 3.66 7.56 -2.91 -0.02 3.64 16 14 C 0.02 1.13 5.43 84.65 0.46 1.59 16 15 N -0.90 -56.58 13.07 21.45 0.28 -56.30 16 16 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 20 O -0.38 -21.04 10.39 -148.98 -1.55 -22.59 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.18 6.57 -2.39 -0.02 1.16 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.03 1.29 7.91 -2.39 -0.02 1.27 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.50 6.57 -2.39 -0.02 2.48 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 33 H 0.08 2.51 7.88 -2.39 -0.02 2.49 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.56 7.70 -2.39 -0.02 2.54 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -67.87 288.61 4.62 -63.25 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.01 Total: 10.70 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 2.86 Total: -42.38 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.28 Total: -56.30 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.55 Total: -22.59 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.87 4.62 -63.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394123582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.049 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds